Athurva Gore/LabNotes/2009-8-14
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[edit]
Probe Generation[edit]
- DONE
- KKESH72
- RPLCACRD
- CpG-SNP set (with 80 bp gap)
- CURRENTLY RUNNING:
- FlyDup901
- FlyDup936
- FlyDup5279
- A-to-I Probes for Erez and Billy; currently removing unneeded
- Then, remove duplicates, remove probes that target the wrong strand (new script), and remove unneeded.
- preBLAST version is in last step of script.
- Start BLAST, but send out preBLAST version
- TO RERUN:
- LeeCancer (on opposite strand to target cDNA)
- LeeXGenes (on opposite strand to target cDNA)
- ZhangSNP (on opposite strand to target cDNA)
- TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?)