Ylaine/2009-8-17
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New 1K Genomes Reference
- Get 5 more matches and 5 fewer misses than when trio file used for comparison
- Should be more. Too many mismatches? Debugging code.
- Found bug: using reference instead of 1K call for comparison
../Scripts/hetOnly.pl no_dbSNP.new1K >no_dbSNP.new1K.het
- Quality and coverage alone are the best combination of parameters
- For n=50, p=0.3, f = 0.75:
' | Mean | Std |
FP | 25.26 | 7.32 |
MD | 15.20 | 6.17 |
Overall | 18.32 | 4.02 |
Thoughts about classification
- We need a universal classification scheme that doesn't rely on knowing the classes of the training set.
- A more analogous problem is one of clustering