Athurva Gore/LabNotes/2010-1-8

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Revision as of 18:55, 8 January 2010 by >Ajgore (→‎PGP)
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PGP

  • Dataset mapping table (October through now):
    • HL013 to HL030
Flowcell Lane Reads Times 4 Number of Reads Mapped Reads Mapped Downsampled Reads Mapping Rate % Usable Reads
HL013 1 59491092 14872773 12555897 8987088 0.84 0.6
HL014 6 47862784 11965696 8324230 5959697 0.7 0.5
HL015 1 53717748 13429437 9839373 6031436 0.73 0.45
HL019 4 59623024 14905756 8695192 8691338 0.58 0.58
HL024 1 64242556 16060639 14817937 13563313 0.92 0.84
HL025 1 36424692 9106173 8077318 6247035 0.89 0.69
HL027 8 47824792 11956198 9269899 8819601 0.78 0.74
HL028 6 37242492 9310623 5979563 4630087 0.64 0.5
HL029 1 33484628 8371157 3396996 3355959 0.41 0.4
HL030 1 58820868 14705217 8827261 8492613 0.6 0.58
  • We can use this to predict how many usable reads we have for each data set.
    • Count of reads for each PGP sample: