Athurva Gore/LabNotes/2010-1-27

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Revision as of 23:50, 27 January 2010 by >Ajgore (→‎HL034 PGP5 Data)
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PGP Data

HL034 PGP5 Data

  • Got some new PGP5 data from HL034
    • Dr. Zhang tried to map it; ended up with a very low dbSNP percentage (~70%)
  • Can we fix it with some trimming?
    • Tried sliding trimmer 5 and 10
    • Merged it into the previous data
    • Got the following results:
HL013+HL025 (Sliding Trimmer 5): ' HL013+HL025+HL034, Sliding Trimmer 5: HL013+HL025+HL034, Sliding Trimmer 10:
dbSNP 4071 8643 8093
notdbSNP 207 638 486
dbSNP% 95.16% 93.13% 94.34%