AlanFung:Protocol/Mapping
42 ls 43 sudo sh cudasdk_2.3_linux.run 44 cd .. 45 ls 46 cd NVIDIA_GPU_Computing_SDK/ 47 ls 48 cd C/ 49 ls 50 make x86-64=1 51 sudo make x86-64=1 52 cd bin/linux/release/ 53 ./deviceQuery 54 ./deviceQuery |less 55 source /etc/profile 56 ./deviceQuery |less 57 source /etc/init.d/nvidiacuda.sh 58 cd NVIDIA_GPU_Computing_SDK/C/bin/linux/release/ 59 ./deviceQuery 60 source /etc/profile 61 ./deviceQuery 62 ls /dev/nvidia* 63 ls -al /dev/nv* 64 sudo ./deviceQuery 65 source /etc/profile 66 sudo ./deviceQuery 67 modprobe nvidia 68 sudo source /etc/init.d/nvidiacuda.sh 69 source /etc/init.d/nvidiacuda.sh 70 users 71 who 72 modprobe nvidia 73 sudo vim /etc/init.d/nvidiacuda.sh 74 cd NVIDIA_GPU_Computing_SDK/C/bin/linux/release/ 75 ls 76 ./deviceQuery 77 source /etc/profile 78 ./deviceQuery 79 modprobe nvidia 80 sudo mknod -m 666 /dev/nvidia0 c 195 1; 81 cd /dev 82 ls 83 ls | grep nvidia 84 mknod -m 666 /dev/nvidiactl c 195 255 85 sudo mknod -m 666 /dev/nvidiactl c 195 255 86 ls 87 cd 88 cd NVIDIA_GPU_Computing_SDK/C/bin/linux/release/ 89 ls 90 ./deviceQuery 91 lspci | grep -i nvidia 92 who 93 nvidia-xconfig 94 lsmod | grep nvidia 95 ls -l /dev/nv* 96 user 97 users 98 ls 99 sudo /etc/init.d/gdm start 100 ls 101 cd Desktop/ 102 ls 103 rm 10-Q05678V2.pdf 104 cd .. 105 ls 106 cd Documents/ 107 ls 108 cd .. 109 cd De 110 ls 111 cd genemapster/ 112 cd Desktop/ 113 ls 114 cd Desktop/ 115 ls 116 gzip -d CMU-CS-90-190.ps.gz 117 ls 118 rm CMU-CS-90-190.ps 119 cd .. 120 cd NVIDIA_GPU_Computing_SDK/ 121 ls 122 cd C/bin/linux/release/ 123 ls 124 ./deviceQuery 125 source /etc/profile 126 ;s 127 ls 128 ./deviceQuery 129 ./reduction 130 cd 131 cd Desktop/reduction/ 132 ls 133 cd NVIDIA_CUDA_SDK/ 134 ls 135 make x86_64=1 136 make 137 lsmod | grep nvidia 138 ls -l /dev/nv* 139 cd NVIDIA_GPU_Computing_SDK/C/bin/linux/release/ 140 ls 141 ./deviceQuery 142 source /etc/profile 143 ./deviceQuery 144 ls 145 ./bandwidthTest 146 ls 147 ./clock 148 ./reduction 149 ./deviceQuery 150 ./reduction 151 ls 152 ./his 153 ./histogram 154 ./scanLargeArray 155 ls 156 ./matrixMul 157 ./sortingNetworks 158 ./scanLargeArray 159 cd 160 cd NVIDIA_GPU_Computing_SDK/ 161 cd C 162 ls 163 make clean 164 sudo make clean 165 sudo make x86_64=1 -sm13 166 sudo make x86_64=1 sm13 167 sudo make x86_64=1 sm_13 168 make 169 sudo make x86_64=1 170 cd bin/linux/release/ 171 ./reduction --shmoo 172 ./reduction --maxblocks=528 173 ./reduction --threads=512 174 ./reduction --n=10000000000000 175 ./reduction --kernel=0 176 ./reduction --kernel=1 177 ./reduction --kernel=2 178 ./reduction --kernel=3 179 ./reduction --kernel=4 180 ./reduction --kernel=5 181 cd 182 cd NVIDIA_GPU_Computing_SDK/C 183 ;s 184 ls 185 sudo make clean 186 cd .. 187 ls 188 cp -r NVIDIA_GPU_Computing_SDK/ Desktop/ 189 cd Desktop/ 190 ls 191 cd NVIDIA_GPU_Computing_SDK/ 192 l;s 193 l 194 ls 195 cd C/ 196 ls 197 cd src/ 198 ls 199 cd 200 cd Desktop/ 201 cd NVIDIA_GPU_Computing_SDK/ 202 ls 203 cd C/ 204 ls 205 make x86_64=1 206 cd bin/linux/release/ 207 ls 208 ./reduction 209 cd 210 cd /media/disk 211 ls 212 cd bowtie-0.12.1/ 213 ls 214 make 215 ls 216 ./bowtie 217 cd/media/disk 218 cd/media 219 cd 220 cd/media/disk 221 cd/media 222 ls 223 cd documents 224 cd bowtie-0.12.1 225 cd desktop 226 desktop 227 cd Desktop 228 ls 229 cd Documents 230 ls 231 cd Document 232 cd Documents 233 cd 234 ls 235 cd Documents 236 ls 237 cd /home 238 cd / 239 ls 240 cd media 241 ls 242 cd disk 243 ls 244 cd bowtie-0.12.1 245 ls 246 cd make 247 make 248 Make 249 Makefile 250 ebwt_search.cpp 251 Makefile 252 ls 253 make 254 Makefile 255 cd Makefile 256 make 257 ls 258 ls 259 cd Public 260 ls 261 up 262 cd /home 263 ls 264 cd jack.yee 265 ls 266 cd examples.desktop 267 ls 268 cd /home 269 ls 270 cd genemapster 271 ls 272 cd /home 273 cd dinh 274 ls 275 cd /home 276 cd genemapster 277 ls 278 cd NVIDIA_GPU_Computing_SDR 279 cd / 280 ls 281 cd media 282 ls 283 cd disk 284 ls 285 cd bowtie-0.12.1 286 ls 287 ~#make 288 ~make 289 ls 290 ~#Makefile 291 ~#Make 292 ~#make 293 cd Desktop/ 294 ls 295 cd NVIDIA_GPU_Computing_SDK/ 296 ls 297 cd C 298 ls 299 make clean 300 ls 301 cd Desktop/NVIDIA_GPU_Computing_SDK/C/src/reduction/ 302 ls 303 gcc quicksort.c 304 ./a.out 305 cd /media/disk 306 ls 307 cd bspp 308 ls 309 cd HarvardPD.methylFreq.BED/ 310 ls 311 vim JD-CPG97K+30K-Harvard-B0060.1-Jan22.BED.txt 312 cd 313 cd Desktop/NVIDIA_GPU_Computing_SDK/C/src/reduction/ 314 ls 315 gcc quicksort.c 316 g++ quicksort.c 317 gcc quicksort.c 318 ./a.out 319 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 320 gcc quicksort.c 321 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 322 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 323 gcc quicksort.c 324 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 325 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 326 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 327 gcc quicksort.c 328 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 329 gcc quicksort.c 330 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 331 gcc quicksort.c 332 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 333 gcc quicksort.c 334 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 335 sudo apt-get install valgrind 336 cd a 337 cd /media/disk/bspp/HarvardPD.methylFreq.BED/ 338 ls 339 gcc quicksort.c 340 ./a.out JD-CPG97K+30K-Harvard-B0060.1-Jan22.BED.txt JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 341 gcc quicksort.c 342 ./a.out JD-CPG97K+30K-Harvard-B0060.1-Jan22.BED.txt JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt ls 343 ./a.out JD-CPG97K-Harvard-M0124.3-Jan28.BED.txt 344 cd Desktop/NVIDIA_GPU_Computing_SDK/C/src/reduction/ 345 ls 346 gcc quicksort.c 347 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 348 gcc quicksort.c 349 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 350 gcc quicksort.c 351 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 352 gcc quicksort.c 353 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 354 gcc quicksort.c 355 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 356 gcc quicksort.c 357 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 358 ls 359 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 360 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 361 ls 362 gcc quicksort.c 363 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 364 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 365 gcc quicksort.c 366 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 367 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 368 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 369 ls 370 gcc quicksort.c 371 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 372 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 373 gcc quicksort.c 374 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 375 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 376 gcc quicksort.c 377 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 378 gcc quicksort.c 379 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 380 gcc quicksort.c 381 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 382 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 383 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 384 ls 385 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 386 gcc quicksort.c 387 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 388 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 389 gcc quicksort.c 390 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 391 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 392 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 393 ls 394 gcc quicksort.c 395 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 396 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 397 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 398 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.s 399 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 400 ls 401 gcc quicksort.c 402 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 403 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 404 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 405 ls 406 gcc quicksort.c 407 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 408 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 409 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 410 gcc quicksort.c 411 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 412 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 413 rm JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 414 ls 415 cd /media/disk/bspp/HarvardPD.methylFreq.BED/ 416 cd 417 cd Desktop/ 418 ls 419 cd NVIDIA_GPU_Computing_SDK/C/src/reduction/ 420 ls 421 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 422 ls 423 gcc qsort_example.c 424 ls 425 ./a.out 426 ls 427 gcc quicksort.c 428 ./a.out JD-CPG97K+30K-Harvard-B0060.1-Jan22.BED.txt JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt ls 429 ./a.out JD-CPG97K+30K-Harvard-B0060.1-Jan22.BED.txt JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 430 gcc quicksort.c 431 ./a.out JD-CPG97K+30K-Harvard-B0060.1-Jan22.BED.txt JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 432 ls 433 gcc quicksort.c 434 ./a.out JD-CPG97K+30K-Harvard-B0060.1-Jan22.BED.txt JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 435 ls 436 ./a.out JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt 437 ls 438 vim JD-CPG97K-Harvard-B0047.1-Jan22.BED.txt.sorted 439 cd /home 440 ls 441 cd / 442 cd ls 443 ls 444 cd media 445 cd / 446 ls 447 cd media 448 ls 449 cd disk 450 ls 451 cd bowtie-0.12.1 452 ls 453 make 454 cd /home 455 ls 456 jack.yee 457 cdjack.ee 458 cd jack.yee 459 ls 460 copy 461 cd /home 462 ls 463 cd / 464 ls 465 cd media 466 cd \home 467 cd 468 cd / 469 ls 470 cd media 471 ls 472 cd disk 473 ls 474 cd bowtie-0.12.1 475 ls 476 mae 477 make 478 ebwt_search.cpp 479 cd / 480 ls 481 cd /media 482 ls 483 cd / disk 484 ls 485 cd /media 486 ls 487 cd /disk 488 exit 489 ls 490 cd /home/Desktop/advo920 491 cd Desktop 492 ls 493 cd . 494 cd .. 495 ls 496 cd .. 497 ls 498 cd advo 499 vi testfile.cpp 500 exit 501 cd /media/disk/bapp/HL040 502 ls 503 cd media 504 cd /.. 505 ls 506 cd media 507 ls 508 cd /disk/bspp/HL0040 509 cd /disk/bspp/HL0040$ 510 ls 511 cd disk 512 ls 513 cd bspp 514 ls 515 cd HL0040 516 ls 517 gzip -decompress s_*_sequence.txt.gz 518 gzip -d s_*_sequence.txt.gz 519 ls 520 perl bisMapperWgSoap.pl s_6_sequence.txt & 521 ps all 522 history
genemapster@genemapster:/media/disk/bspp/HL0040$ ps all F UID PID PPID PRI NI VSZ RSS WCHAN STAT TTY TIME COMMAND 0 0 3033 1 20 0 3944 608 n_tty_ Ss+ tty4 0:00 /sbin/getty 38400 tty4 0 0 3034 1 20 0 3944 608 n_tty_ Ss+ tty5 0:00 /sbin/getty 38400 tty5 0 0 3037 1 20 0 3944 608 n_tty_ Ss+ tty2 0:00 /sbin/getty 38400 tty2 0 0 3038 1 20 0 3944 604 n_tty_ Ss+ tty3 0:00 /sbin/getty 38400 tty3 0 0 3040 1 20 0 3944 604 n_tty_ Ss+ tty6 0:00 /sbin/getty 38400 tty6 4 0 3488 3483 20 0 141144 43612 select Ss+ tty7 0:16 /usr/X11R6/bin/X :0 -br -audit 0 -auth /var/lib/gdm/:0.Xauth -nolisten tc 0 0 3904 1 20 0 3944 608 n_tty_ Ss+ tty1 0:00 /sbin/getty 38400 tty1 0 1001 3934 3933 18 -2 20352 3456 wait S<s pts/0 0:00 -bash 0 1000 3967 3965 18 -2 20944 3776 n_tty_ S<s+ pts/1 0:00 -bash 4 1000 4333 3934 18 -2 43164 1656 wait S< pts/0 0:00 su genemapster 0 1000 4340 4333 18 -2 20952 3820 n_tty_ S<+ pts/0 0:00 bash 0 1000 5772 5769 18 -2 20964 3848 wait S<s pts/2 0:00 -bash 0 1000 5944 4340 18 -2 18172 2440 wait S< pts/0 7:36 perl bisMapperWgSoap.pl s_5_sequence.txt 0 1000 5958 5772 18 -2 18172 2416 sync_p D< pts/2 7:03 perl bisMapperWgSoap.pl s_6_sequence.txt 0 1000 6024 5944 18 -2 1417424 1119456 sync_p D< pts/0 0:01 /usr/local/soap2.20release/soap -r 0 -v 2 -p 4 -D /media/disk/HsGenome/hg 0 1000 6186 5772 18 -2 6744 932 - R<+ pts/2 0:00 ps all genemapster@genemapster:/media/disk/bspp/HL0040$