Sam:LabNotes/Microbiome-new/2011-4-19

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Revision as of 06:13, 20 April 2011 by >Sam Chiang (Created page with '='''Recruit metagenomic contigs using mouse SAG contigs as baits - BLATing approach'''= ==Objective== *Extract more contigs from metagenomic data into mouse GI microbiome SAG da…')
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Recruit metagenomic contigs using mouse SAG contigs as baits - BLATing approach

Objective

  • Extract more contigs from metagenomic data into mouse GI microbiome SAG data.
  • If this approach is working, the increased data amount will help us to extend SAG contig length and build up genome of unknown bacteria.

Background

  • I did BLATing test and found that BLAT can working either 1 string reference genome or multiple sequence references.
  • We The pre