Rui:RNAseq analysis on Hiseq111005

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Revision as of 23:32, 14 October 2011 by >RuiLiu (Created page with '==RNAseq analysis on Hiseq111005]] ===Data=== * RNA libraries were used for HL101 run, Indx5-13, [http://genome-tech.ucsd.edu/LabNotes/index.php/Rui_Liu#RNA_libraries_for_Dr._Yi…')
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==RNAseq analysis on Hiseq111005]]

Data

  1. make shortcut for input data:
ln -s /media/Ext6T/111005_SN853/RNAseq Hiseq111005/
  1. make a shorcut for output data:
ln -s /media/Ext4T/DataDrive.backup/RL_Scratch/RNAseq RNAseq/
  1. make copy of sequence file
cp Hiseq111005/* RNAseq/
  1. combine different files in different lanes into one file for each index:
less *Indx3.txt > Indx3.txt

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