Rui:LabNotes/Haplotyping/2011-11-3

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Revision as of 01:22, 4 November 2011 by >RuiLiu (→‎Test condition for haplotyping)
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Test condition for haplotyping

  • Start with ~1pg cell lysate aliquot
  • Perform limited time MDA
  • Tagmentation and PCR
  • Need to achieve ~1000X increase. Based on 50cell experiments, it seems 1k-2k increase after 2hrs when QPCR shoots up around 12ct and reach the saturation at 20ct.
  • Key point is when to stop MDA based on QPCR curve

Samples

Procedures

Results

Ctrls File:11.3.11 Ctrls.jpg

@17ct, #2 up File:11.3.11 17ct.jpg @22ct, #3 up File:11.3.11 22ct.jpg

@27ct, #3,4 start to up File:11.3.11 27ct.jpg @30ct, all start up File:11.3.11 30ct.jpg


EtOH precipitation

  • Samples: 17-2, 22-3, 27-3,4, 30-1,2,3,4