Noi:Quicklinks

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Revision as of 08:32, 15 September 2012 by >Noi
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Link to calendar:[[1]]
Install R packages: install.packages("package_name")
SNP 134 data base : on genome-miner: /media/Ext4T/GenomeDB/HsGenome/snp134_snv.txt
genemapster address: nplongth@genemapster.dynamic.ucsd.edu

Triton

  • checkjob -v jobid = job diagnosis
  • gbalance -p zhang-lab = check credit balance of zhang-lab

R plotting

  • Multiple plot on the same axis
plot(x, y1, ylim=range(c(y1,y2)))
par(new=TRUE)
plot(x, y2, ylim=range(c(y1,y2)), axes = FALSE, xlab = "", ylab = "")

http://search.cpan.org/~callahan/Math-CDF-0.1/CDF.pm
R:Data structure: http://www.statmethods.net/input/datatypes.html
R: Graphic parameters, text & symbol size, plotting symbols, lines, colors, fonts, margins and graph size:http://www.statmethods.net/advgraphs/parameters.html
R: color chart:http://research.stowers-institute.org/efg/R/Color/Chart/ColorChart.pdf
Multiple testing correction: MultipleTestCorrection_Agilent

Dinh:COMPUTATIONAL/bisReadMapper: http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh:COMPUTATIONAL/bisReadMapper
BEDtools and Table browser (to get annotated file)

Group: Genes and Gene Prediction Tracks
Track: RefSeq Genes
Table: RefGenes