Daniel:Notebook/GenomeMiner/2013-7-18
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HL155
=Bowtie Indexing
Using the fasta files I created Tuesday, I created an index file.
Creating the Index File
bowtie2-build -f Probelist_Set1.fa,Probelist_Set2.fa,Probelist_Set3.fa,Probelist_Set4.fa hcrp_probeseq
Test Bowtie2 Command Line
bowtie2 -x hcrp_probeseq -U s_2_1_Indx12.fq,s_2_1_Indx53.fq,s_2_1_Indx54.fq -S testSAMout &