Daniel:Notebook/GenomeMiner/2013-8-14
HL155
[[Daniel:Notebook/GenomeMiner|
Redid some statistics on probe counts. These will also be in the lab meeting for today, but I will include them here as well.
Probe Count histograms
Just the same as previously reported, but with smaller bins. Normalization for x axis is also changed. Now it is based on the expected number of reads, calculated by dividing the total number of reads for a given set by the total number of probes in that set (usually around 250 reads). So a one means the probes were amplified more or less linearly, <1 means they were underamplified, and >1 means the probe was overamplifed.
Pie Chart Statistics
Pie chart showing probe count statistics. Probe counts are divided into 3 classes: 0 reads, over-amplified (described as >5x the expected count), and normally amplified reads.
File:V6 zeros.png|File:V4 zeros.png