Daniel:Notebook/GenomeMiner/2013-8-14

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Revision as of 18:53, 14 August 2013 by >Djacobse
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HL155

[[Daniel:Notebook/GenomeMiner|

Redid some statistics on probe counts. These will also be in the lab meeting for today, but I will include them here as well.

Probe Count histograms

Just the same as previously reported, but with smaller bins. Normalization for x axis is also changed. Now it is based on the expected number of reads, calculated by dividing the total number of reads for a given set by the total number of probes in that set (usually around 250 reads). So a one means the probes were amplified more or less linearly, <1 means they were underamplified, and >1 means the probe was overamplifed.

File:Probecounts-labeled.png

Pie Chart Statistics

Pie chart showing probe count statistics. Probe counts are divided into 3 classes: 0 reads, over-amplified (described as >5x the expected count), and normally amplified reads.

File:V6 zeros.png|File:V4 zeros.png