Daniel:Notebook/GenomeMiner/2013-9-25

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Revision as of 20:31, 25 September 2013 by >Djacobse (→‎Overview of Recent Results)
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Mock HL155 (Started 9/9/2013)

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Mimic Data Using Short Reference (BWA)

Error Counting Results

Error Rate: 1.177%
Error Rate of Insertions: 0.195%
Error Rate of Deletions: 1.42e-06%
Error Rate of Substitutions: 0.982%

Overview of Recent Results

Comparing Real Data

File:ProbeComparison Improved.png|File:AgilentMYCA ErrorComp090313.png

Left: Uses full length reference file; Right: uses shortened reference files

Comparing Bowtie and BWA Reference File Length Data

Retrospective

Given what we know now (that deletions are seriously undercounted using shortened reference files)