Daniel:Notebook/GenomeMiner/2013-10-2
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HL155
Novoalign Sequence Alignment
Running novoalign on the sequencing data from HL155 since novoalign seems to be the best alignment software (detects errors most correctly). Working off Matt's previous methods.
Build Index
novoindex index_v4s1fullrevcomp.ndx V4S1_fullrevcomp.fa
Run Novoalign