Daniel:Notebook/GenomeMiner/2013-10-9

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Revision as of 17:34, 9 October 2013 by >Djacobse (→‎Pipeline)
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HL155 Novoalign (Started 10/3/2013)

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V4S3

Pipeline

Build Index

novoindex index_v4s3fullrevcomp.ndx V4S3_fullrevcomp.fa

Novoalign

novoalign -d index_v4s3fullrevcomp.ndx -f ../../s_2_1_Indx13.txt -F ILMFQ -r ALL -o SAM -o FULLNW > novo_v4s3.sam