Daniel:Notebook/Haplotyping/2014-1-22
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HiC Data Analysis
From the data from Bing Ren's lab, I'm planning on working through the HaploSeq analysis pipeline.
Input Data
The HiC data from Bing Ren's lab can be found on Genome Miner at:
/home/kunzhang/seqStore/140110_HiC_BingRen
Also being used are the hg19 whole genome fasta file:
/GenomeDB/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/genome.fa
and the PGP1F data, specifically the variant calls from the data from the published paper (Ball et al, PNAS 2005):
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