Daniel:Notebook/Haplotyping/2014-1-22

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Revision as of 18:41, 22 January 2014 by >Djacobse (Created page with "=HiC Data Analysis= Back to Calendar From the data from Bing Ren's lab, I'm planning on working through the HaploSeq analysis pipeline. ==In...")
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HiC Data Analysis

Back to Calendar

From the data from Bing Ren's lab, I'm planning on working through the HaploSeq analysis pipeline.

Input Data

The HiC data from Bing Ren's lab can be found on Genome Miner at:

/home/kunzhang/seqStore/140110_HiC_BingRen

Also being used are the hg19 whole genome fasta file:

/GenomeDB/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/genome.fa

and the PGP1F data, specifically the variant calls from the data from the published paper (Ball et al, PNAS 2005):

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