Daniel:Notebook/HiResChrPaint/2014-6-19

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Revision as of 17:56, 19 June 2014 by >Djacobse (Created page with "=Probe Design (Started 06/17/2014)= Back to Calendar ==Probe Mining== The OligoArray script mi...")
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Probe Design (Started 06/17/2014)

Back to Calendar

Probe Mining

The OligoArray script might actually need the blast database broken up into 1kb chunks for some reason. So, let's try that.

  1. Create BLAST database from fragmented genome
    1. formatdb -i in_hg38.fas -p T -o F
[formatdb] WARNING: Cannot add sequence number 1953021 (lcl|range=hg38:1953020000-1953020999) because it has zero-length.
[formatdb] FATAL ERROR: Fatal error when adding sequence to BLAST database.

So that's a fatal error.