Matt:LabNotes/2014-8-1

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Revision as of 01:02, 2 August 2014 by >Mzcai (Created page with "==GenePattern: Tophat & RNA-SeQC== *Using genepattern.broadinstitute.org ===Tophat version 8.6=== *Upload files s_1_1_Indx26.txt s_1_1_Indx27.txt s_1_1_Indx28.txt s_...")
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GenePattern: Tophat & RNA-SeQC

  • Using genepattern.broadinstitute.org

Tophat version 8.6

  • Upload files
 s_1_1_Indx26.txt
 s_1_1_Indx27.txt
 s_1_1_Indx28.txt
 s_1_1_Indx29.txt
 s_1_1_Indx32.txt
  • Bowtie index
 Homo_sapiens_hg19_UCSC
  • GTF file
 Homo_sapiens_GENCODE_hg19_v7_chr1_format.gtf
  • library type
 Standard Illumina (fr-unstranded)
  • quality value scale
 Solexa 1.3 (Phred 64)