Matt:LabNotes/2014-8-1
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GenePattern: Tophat & RNA-SeQC
- Using genepattern.broadinstitute.org
Tophat version 8.6
- Upload files
s_1_1_Indx26.txt s_1_1_Indx27.txt s_1_1_Indx28.txt s_1_1_Indx29.txt s_1_1_Indx32.txt
- Bowtie index
Homo_sapiens_hg19_UCSC
- GTF file
Homo_sapiens_GENCODE_hg19_v7_chr1_format.gtf
- library type
Standard Illumina (fr-unstranded)
- quality value scale
Solexa 1.3 (Phred 64)