EricChu:LabNotesMDA/2014-8-25
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PGP1 21 Combined CoRE and Tag Reads (mapped by BWA)
sample | Raw_reads | Mapping_rate | Mappable_reads | Clonal_rate | unique | 1+ | 1 | 2 | 3 | 4+ | contig |
25 | 8,915 | 30.67% | 2,734 | 1.13% | 2,703 | 129431 | 127599 | 921 | 66 | 695 | 0 |
1 | 1,767,726 | 74.59% | 1,318,562 | 55.73% | 583,727 | 9516093 | 5692190 | 1230581 | 626839 | 1965634 | 218 |
2 | 2,600,727 | 82.44% | 2,143,913 | 55.31% | 958,115 | 10846262 | 6082060 | 1213949 | 640543 | 2900424 | 321 |
3 | 2,166,722 | 75.21% | 1,629,621 | 50.70% | 803,403 | 9026307 | 4990213 | 1012535 | 533179 | 2484844 | 299 |
4 | 2,982,718 | 81.90% | 2,442,744 | 51.83% | 1,176,670 | 13628682 | 8211575 | 1393897 | 676569 | 3340779 | 341 |
5 | 2,985,776 | 78.28% | 2,337,121 | 49.13% | 1,188,893 | 12998138 | 7214372 | 1415290 | 747580 | 3619125 | 389 |
6 | 4,794,307 | 84.40% | 4,046,302 | 60.66% | 1,591,815 | 16517249 | 9582723 | 1686003 | 842768 | 4400376 | 443 |
7 | 2,875,956 | 72.92% | 2,097,091 | 49.00% | 1,069,516 | 12972372 | 6903851 | 1650877 | 879066 | 3533693 | 389 |
8 | 2,882,183 | 78.40% | 2,259,734 | 40.67% | 1,340,700 | 17241147 | 9578019 | 2195105 | 1139208 | 4321040 | 487 |
9 | 2,973,394 | 84.98% | 2,526,707 | 35.87% | 1,620,377 | 20867654 | 10813806 | 2862995 | 1540997 | 5640480 | 775 |
10 | 2,167,476 | 77.03% | 1,669,648 | 30.19% | 1,165,581 | 18640056 | 9981373 | 2888407 | 1482285 | 4278796 | 591 |
11 | 2,137,080 | 81.27% | 1,736,911 | 37.14% | 1,091,822 | 20917290 | 12273611 | 3154542 | 1551941 | 3927547 | 633 |
12 | 4,553,703 | 87.66% | 3,991,612 | 13.50% | 3,452,744 | 67452229 | 34571848 | 12154514 | 6502810 | 14206613 | 3151 |
13 | 3,197,307 | 68.98% | 2,205,348 | 13.50% | 1,907,626 | 53586423 | 34648595 | 9749094 | 4047238 | 5126604 | 2131 |
14 | 3,931,535 | 89.05% | 3,500,954 | 11.01% | 3,115,499 | 74902025 | 43560883 | 13922451 | 6635791 | 10767573 | 3442 |
15 | 3,372,990 | 70.22% | 2,368,534 | 16.55% | 1,976,542 | 58662869 | 38491396 | 10903238 | 4382136 | 4871109 | 2284 |
16 | 3,264,362 | 79.82% | 2,605,704 | 10.80% | 2,324,288 | 74432147 | 52049786 | 12877420 | 4769835 | 4723437 | 2293 |
17 | 3,496,240 | 77.57% | 2,711,982 | 15.77% | 2,284,302 | 74071152 | 52407506 | 12878522 | 4583367 | 4187083 | 2170 |
18 | 3,017,219 | 81.47% | 2,458,031 | 11.25% | 2,181,503 | 64755388 | 42915926 | 11790071 | 4687801 | 5346162 | 2471 |
19 | 1,402,425 | 92.07% | 1,291,258 | 5.86% | 1,215,590 | 43381886 | 32591056 | 6837623 | 2191031 | 1749037 | 947 |
20 | 3,720,498 | 83.96% | 3,123,552 | 16.56% | 2,606,292 | 66777895 | 41039684 | 12050112 | 5461023 | 8211943 | 2787 |
21 | 3,298,736 | 88.73% | 2,926,946 | 12.84% | 2,551,126 | 67473637 | 42974264 | 11765137 | 5143403 | 7574981 | 2694 |
22 | 4,405,230 | 90.49% | 3,986,500 | 12.00% | 3,508,120 | 77232990 | 43439158 | 13826921 | 6860909 | 13089956 | 3770 |
23 | 1,718,252 | 78.28% | 1,344,992 | 20.32% | 1,071,690 | 33514168 | 23733165 | 5446737 | 2025667 | 2296236 | 994 |
24 | 4,153,367 | 83.96% | 3,487,330 | 16.59% | 2,908,782 | 68349048 | 39717105 | 12252959 | 5937268 | 10425575 | 3517 |
73,874,844 | 81.50% | 60,213,831 | 27.76% | 43,697,428 | 37537 | ||||||
PGP1 22 Combined Simplified and Tag Reads (mapped by BWA)
sample | Raw_reads | Mapping_rate | Mappable_reads | Clonal_rate | unique | 1+ | 1 | 2 | 3 | 4+ | contig |
25 | 1,014,446 | 89.82% | 911,158 | 0.96% | 902,411 | 42,007,823 | 39,361,716 | 2,142,641 | 338,443 | 160,432 | 104 |
1 | 1,721,573 | 76.75% | 1,321,337 | 20.42% | 1,051,520 | 26,956,965 | 19,051,494 | 3,293,984 | 1,411,110 | 3,197,334 | 512 |
2 | 1,393,623 | 78.75% | 1,097,511 | 24.89% | 824,341 | 19,914,102 | 13,790,175 | 2,354,223 | 1,067,455 | 2,694,387 | 538 |
3 | 1,214,890 | 16.75% | 203,469 | 16.10% | 170,710 | 4,795,763 | 3,374,611 | 633,185 | 276,101 | 510,241 | 103 |
4 | 3,249,097 | 74.90% | 2,433,488 | 42.20% | 1,406,556 | 21,453,982 | 12,382,109 | 2,617,083 | 1,339,660 | 5,108,391 | 813 |
5 | 2,452,694 | 54.75% | 1,342,758 | 43.41% | 759,867 | 15,253,924 | 9,950,700 | 1,802,084 | 868,142 | 2,625,918 | 427 |
6 | 3,942,205 | 74.05% | 2,919,107 | 45.80% | 1,582,156 | 23,982,090 | 14,367,384 | 2,717,722 | 1,358,064 | 5,530,237 | 863 |
7 | 3,487,723 | 78.87% | 2,750,913 | 39.87% | 1,654,124 | 25,511,841 | 14,450,825 | 3,317,927 | 1,661,491 | 6,075,289 | 1031 |
8 | 2,404,304 | 84.55% | 2,032,896 | 15.63% | 1,715,154 | 40,702,300 | 24,475,918 | 6,767,943 | 3,183,182 | 6,266,812 | 1577 |
9 | 2,401,126 | 83.10% | 1,995,326 | 15.63% | 1,683,457 | 36,503,127 | 20,048,241 | 6,286,353 | 3,251,678 | 6,900,584 | 1422 |
10 | 574,906 | 85.77% | 493,106 | 9.05% | 448,480 | 12,842,508 | 8,994,652 | 1,854,628 | 720,982 | 1,264,979 | 293 |
11 | 1,431,850 | 76.01% | 1,088,404 | 17.70% | 895,756 | 22,304,961 | 14,479,148 | 3,354,659 | 1,458,058 | 2,998,419 | 584 |
12 | 3,739,082 | 78.86% | 2,948,590 | 29.67% | 2,073,743 | 37,924,722 | 21,551,076 | 5,745,717 | 2,839,631 | 7,773,491 | 1367 |
13 | 2,149,038 | 83.52% | 1,794,982 | 11.47% | 1,589,098 | 42,816,684 | 26,876,392 | 7,267,967 | 3,307,014 | 5,351,301 | 1444 |
14 | 900,164 | 72.81% | 655,410 | 10.33% | 587,706 | 19,140,058 | 14,646,725 | 2,395,761 | 809,554 | 1,275,945 | 291 |
15 | 1,792,737 | 82.55% | 1,479,862 | 23.61% | 1,130,467 | 23,386,851 | 14,283,418 | 3,391,849 | 1,534,792 | 4,162,573 | 631 |
16 | 1,661,017 | 82.10% | 1,363,654 | 8.73% | 1,244,607 | 35,717,554 | 23,412,821 | 5,965,297 | 2,562,005 | 3,761,684 | 1090 |
17 | 3,867,925 | 81.19% | 3,140,423 | 22.89% | 2,421,580 | 55,923,111 | 36,224,492 | 8,385,727 | 3,587,365 | 7,709,229 | 1637 |
18 | 2,417,798 | 77.27% | 1,868,138 | 15.18% | 1,584,555 | 37,211,161 | 22,222,683 | 6,118,456 | 2,927,473 | 5,926,351 | 1267 |
19 | 1,750,911 | 76.70% | 1,342,934 | 20.50% | 1,067,633 | 27,150,915 | 17,680,402 | 4,334,702 | 1,846,382 | 3,273,962 | 915 |
20 | 5,714,105 | 77.00% | 4,399,962 | 27.69% | 3,181,613 | 70,042,421 | 45,315,865 | 9,478,137 | 4,323,910 | 10,907,983 | 1905 |
21 | 1,969,271 | 79.82% | 1,571,794 | 12.67% | 1,372,648 | 34,767,438 | 20,991,038 | 5,950,750 | 2,856,329 | 4,953,514 | 1308 |
22 | 1,800,697 | 82.96% | 1,493,816 | 16.43% | 1,248,382 | 33,614,515 | 22,084,346 | 5,146,470 | 2,329,712 | 4,037,882 | 1156 |
23 | 888,208 | 69.63% | 618,445 | 8.60% | 565,259 | 17,936,086 | 12,900,500 | 2,542,565 | 1,052,910 | 1,425,040 | 501 |
24 | 1,589,080 | 86.10% | 1,368,126 | 7.45% | 1,266,201 | 37,663,022 | 25,615,733 | 6,062,029 | 2,545,006 | 3,425,221 | 1241 |
55,528,470 | 76.78% | 42,635,609 | 0.243894032 | 23026 | |||||||
PGP1 23 Device V8 5min Incubation + 5min Pump (instead of 10min pump) with Simplified Tag (mapped by BWA)
sample | Raw_reads | Mapping_rate | Mappable_reads | Clonal_rate | unique | 1+ | 1 | 2 | 3 | 4+ | contig |
25 | 390,006 | 76.46% | 298,208 | 19.78% | 239,222 | 7,489,203 | 4,894,180 | 1,385,612 | 490,980 | 713,755 | 108 |
1 | 2,659,539 | 83.08% | 2,209,639 | 68.80% | 689,407 | 10,215,316 | 6,323,889 | 1,192,133 | 508,564 | 2,189,316 | 237 |
2 | 727,413 | 84.81% | 616,910 | 50.99% | 302,348 | 6,944,381 | 4,641,825 | 1,081,690 | 292,160 | 926,611 | 103 |
3 | 521,423 | 88.41% | 461,015 | 24.38% | 348,620 | 10,988,404 | 7,439,409 | 1,948,035 | 616,985 | 975,599 | 196 |
4 | 525,708 | 87.83% | 461,722 | 26.72% | 338,350 | 10,973,235 | 7,122,683 | 2,186,736 | 662,365 | 993,915 | 185 |
5 | 1,700,163 | 82.25% | 1,398,437 | 25.37% | 1,043,654 | 32,861,572 | 22,484,596 | 5,805,589 | 1,679,607 | 2,878,622 | 579 |
6 | 1,107,542 | 87.84% | 972,830 | 32.98% | 651,991 | 16,436,441 | 9,150,974 | 3,251,616 | 1,268,754 | 2,752,930 | 523 |
7 | 427,288 | 87.25% | 372,800 | 19.48% | 300,179 | 11,615,241 | 8,570,940 | 2,122,883 | 434,522 | 481,619 | 66 |
8 | 2,584,602 | 88.64% | 2,291,090 | 41.08% | 1,349,910 | 28,798,510 | 15,619,951 | 4,994,143 | 2,123,651 | 6,046,375 | 1129 |
9 | 8,180,400 | 85.99% | 7,034,677 | 32.43% | 4,753,331 | 121,509,729 | 69,122,660 | 24,492,005 | 9,368,317 | 18,510,607 | 3456 |
10 | 404,400 | 83.99% | 339,654 | 34.66% | 221,930 | 7,760,462 | 5,112,640 | 1,666,236 | 439,459 | 534,630 | 71 |
11 | 998,664 | 90.16% | 900,378 | 29.85% | 631,615 | 16,598,420 | 9,966,845 | 2,988,858 | 1,238,997 | 2,394,799 | 564 |
12 | 668,384 | 89.85% | 600,517 | 27.41% | 435,915 | 13,216,397 | 7,977,879 | 2,754,209 | 946,845 | 1,528,978 | 287 |
13 | 941,089 | 83.01% | 781,226 | 24.63% | 588,810 | 17,251,261 | 10,357,161 | 3,493,552 | 1,277,657 | 2,115,129 | 425 |
14 | 845,880 | 87.41% | 739,366 | 25.34% | 552,011 | 15,217,472 | 9,419,365 | 2,775,760 | 1,087,924 | 1,922,064 | 389 |
15 | 1,076,847 | 86.73% | 933,979 | 27.65% | 675,734 | 19,058,713 | 12,003,172 | 3,363,353 | 1,295,367 | 2,388,385 | 455 |
16 | 3,014,868 | 87.74% | 2,645,176 | 36.71% | 1,674,132 | 34,422,449 | 19,592,176 | 5,511,154 | 2,455,845 | 6,847,834 | 1237 |
17 | 2,698,774 | 89.26% | 2,408,808 | 33.73% | 1,596,317 | 34,399,231 | 19,620,188 | 5,548,784 | 2,522,603 | 6,694,835 | 1113 |
18 | 1,105,299 | 87.76% | 970,032 | 25.47% | 722,965 | 21,725,473 | 14,343,768 | 3,789,616 | 1,318,271 | 2,261,808 | 435 |
19 | 1,397,539 | 87.53% | 1,223,256 | 27.54% | 886,371 | 22,667,350 | 13,420,963 | 4,044,354 | 1,654,389 | 3,535,910 | 713 |
20 | 2,017,225 | 89.65% | 1,808,414 | 28.25% | 1,297,537 | 41,916,943 | 28,711,133 | 7,523,306 | 2,213,918 | 3,453,860 | 685 |
21 | 3,095,545 | 89.04% | 2,756,401 | 30.84% | 1,906,327 | 45,754,077 | 27,486,317 | 7,756,429 | 3,078,720 | 7,416,737 | 1556 |
22 | 3,334,210 | 89.28% | 2,976,897 | 31.61% | 2,035,900 | 59,238,516 | 37,021,927 | 12,163,660 | 3,461,182 | 6,576,644 | 1260 |
23 | 3,992,688 | 90.34% | 3,607,191 | 39.49% | 2,182,711 | 46,879,680 | 28,760,337 | 7,287,374 | 2,780,214 | 8,035,223 | 1492 |
24 | 1,096,669 | 89.15% | 977,706 | 56.73% | 423,053 | 7,537,136 | 5,042,783 | 873,363 | 360,918 | 1,258,672 | 176 |
45,512,165 | 87.42% | 39,786,329 | 0.350808152 | 17440 | |||||||
PGP1 24 Device V8 Random 8-mer Simplified Tag (mapped by BWA)
sample | Raw_reads | Mapping_rate | Mappable_reads | Clonal_rate | unique | 1+ | 1 | 2 | 3 | 4+ | contig |
1 | 1640076 | 95.86% | 1572110 | 23.70% | 1,199,520 | 21981168 | 10833773 | 3586672 | 1983134 | 5566369 | 804 |
2 | 1340818 | 95.77% | 1284162 | 13.60% | 1,109,516 | 26878170 | 14846041 | 4999405 | 2504898 | 4511311 | 1206 |
3 | 1714130 | 96.38% | 1652070 | 18.07% | 1,353,541 | 29351675 | 16037131 | 5006442 | 2542811 | 5748756 | 1383 |
4 | 1675286 | 96.03% | 1608742 | 19.46% | 1,295,681 | 25392163 | 12842259 | 4284882 | 2329807 | 5918879 | 1187 |
5 | 2011370 | 95.69% | 1924708 | 21.85% | 1,504,159 | 28380830 | 14133749 | 4720764 | 2587161 | 6922616 | 1327 |
6 | 1632231 | 91.70% | 1496836 | 21.74% | 1,171,424 | 22255355 | 11267675 | 3718429 | 2003514 | 5250643 | 1082 |
7 | 2010717 | 95.96% | 1929506 | 27.10% | 1,406,610 | 22903223 | 10893768 | 3379772 | 1936197 | 6677816 | 1058 |
8 | 2216786 | 96.19% | 2132279 | 15.90% | 1,793,247 | 40572299 | 21744432 | 7303293 | 3772678 | 7735989 | 1806 |
9 | 1094654 | 96.98% | 1061620 | 19.77% | 851,738 | 21817547 | 14231060 | 3456982 | 1427346 | 2686762 | 741 |
10 | 1096361 | 96.44% | 1057340 | 19.88% | 847,141 | 21156073 | 13555741 | 3336781 | 1415793 | 2831203 | 756 |
11 | 1075544 | 96.86% | 1041760 | 23.30% | 799,030 | 18986625 | 11799379 | 3099265 | 1338004 | 2733617 | 709 |
12 | 1316826 | 96.86% | 1275469 | 31.36% | 875,482 | 19801901 | 12226333 | 3289857 | 1438165 | 2831979 | 806 |
13 | 1343854 | 96.37% | 1295056 | 24.23% | 981,264 | 22602977 | 13944466 | 3678119 | 1609733 | 3354090 | 901 |
14 | 1288277 | 96.57% | 1244036 | 30.19% | 868,462 | 19602494 | 12368556 | 3022251 | 1301830 | 2893879 | 771 |
15 | 1572440 | 95.57% | 1502812 | 32.18% | 1,019,207 | 22486162 | 13952547 | 3544203 | 1527498 | 3445845 | 889 |
16 | 1477916 | 96.97% | 1433068 | 28.98% | 1,017,765 | 23493259 | 14912324 | 3707302 | 1564398 | 3292831 | 858 |
17 | 1612105 | 96.27% | 1551932 | 13.14% | 1,348,008 | 35924685 | 22001492 | 6346556 | 2850192 | 4709919 | 1593 |
18 | 1114338 | 95.41% | 1063188 | 9.17% | 965,694 | 29830442 | 20323479 | 4902495 | 1982092 | 2605856 | 1134 |
19 | 1739110 | 96.24% | 1673768 | 13.44% | 1,448,814 | 37374913 | 22359095 | 6627724 | 3068474 | 5303082 | 1856 |
20 | 1937720 | 95.90% | 1858214 | 13.76% | 1,602,524 | 42209334 | 26860849 | 6734502 | 2999877 | 5597561 | 1777 |
21 | 3138051 | 96.40% | 3025212 | 12.04% | 2,660,976 | 75671146 | 50186704 | 12176283 | 5048131 | 8243493 | 2999 |
22 | 2220512 | 95.72% | 2125468 | 13.38% | 1,841,080 | 48501173 | 29550492 | 8619506 | 3857800 | 6456863 | 2362 |
23 | 2698960 | 95.70% | 2582802 | 19.60% | 2,076,573 | 42819488 | 22664347 | 7286868 | 3795462 | 9056286 | 2501 |
24 | 63146 | 96.23% | 60766 | 2.52% | 59,235 | 2806948 | 2610635 | 164089 | 20234 | 6945 | 1 |
39031228 | 96.00% | 37452924 | 0.196386061 | 30,096,689 | 30507 | ||||||
PGP1 25 Device V8 Random 9-mer Combined Simplified and Tag Reads (mapped by BWA)
sample | Raw_reads | Mapping_rate | Mappable_reads | Clonal_rate | unique | 1+ | 1 | 2 | 3 | 4+ | contig |
1 | 2,184,291 | 97.10% | 2,120,990 | 22.11% | 1,652,039 | 31,986,378 | 18,232,069 | 4,734,194 | 2,355,190 | 6,658,943 | 788 |
2 | 2,499,709 | 96.74% | 2,418,339 | 26.33% | 1,781,590 | 35,636,576 | 22,425,584 | 4,707,619 | 2,140,726 | 6,353,419 | 782 |
3 | 2,493,052 | 96.91% | 2,416,100 | 25.47% | 1,800,719 | 39,636,619 | 26,273,842 | 5,178,322 | 2,199,214 | 5,972,929 | 799 |
4 | 2,282,055 | 96.54% | 2,203,111 | 27.41% | 1,599,238 | 30,211,006 | 18,461,426 | 3,979,706 | 1,852,751 | 5,905,061 | 741 |
5 | 1,741,480 | 96.36% | 1,678,023 | 23.41% | 1,285,198 | 30,550,974 | 20,731,298 | 4,141,377 | 1,707,914 | 3,959,700 | 675 |
6 | 1,513,290 | 96.45% | 1,459,504 | 23.85% | 1,111,412 | 22,320,418 | 13,654,657 | 3,107,903 | 1,456,327 | 4,097,034 | 561 |
7 | 4,195,597 | 97.25% | 4,080,055 | 29.98% | 2,856,855 | 54,798,794 | 32,503,456 | 7,964,290 | 3,658,513 | 10,659,124 | 1363 |
8 | 1,147,030 | 96.04% | 1,101,583 | 23.61% | 841,499 | 15,193,645 | 8,583,803 | 2,159,621 | 1,117,557 | 3,327,824 | 440 |
9 | 1,995,481 | 96.63% | 1,928,196 | 30.95% | 1,331,419 | 22,749,515 | 13,207,834 | 3,098,844 | 1,511,914 | 4,923,075 | 543 |
10 | 2,317,908 | 97.01% | 2,248,522 | 43.25% | 1,276,036 | 16,413,864 | 8,881,713 | 2,033,889 | 1,048,444 | 4,441,895 | 435 |
11 | 2,070,348 | 95.40% | 1,975,128 | 20.00% | 1,580,102 | 34,827,621 | 21,483,010 | 5,197,168 | 2,369,989 | 5,774,483 | 906 |
12 | 1,481,367 | 95.63% | 1,416,639 | 31.16% | 975,214 | 15,051,833 | 8,138,743 | 2,063,584 | 1,071,142 | 3,774,004 | 440 |
13 | 1,092,801 | 96.79% | 1,057,744 | 24.52% | 798,385 | 14,797,509 | 8,274,996 | 2,315,300 | 1,191,540 | 3,014,347 | 433 |
14 | 912,307 | 96.49% | 880,282 | 21.06% | 694,895 | 12,543,654 | 6,997,807 | 1,762,223 | 934,775 | 2,844,234 | 392 |
15 | 2,433,854 | 96.21% | 2,341,514 | 35.46% | 1,511,213 | 22,980,808 | 12,453,974 | 3,019,964 | 1,558,760 | 5,933,848 | 610 |
16 | 1,022,561 | 96.52% | 986,983 | 12.00% | 868,545 | 21,251,937 | 13,076,239 | 3,467,264 | 1,606,037 | 3,101,750 | 619 |
17 | 1,121,374 | 96.81% | 1,085,658 | 36.95% | 684,507 | 11,128,413 | 6,543,958 | 1,449,179 | 723,509 | 2,408,399 | 322 |
18 | 1,986,108 | 97.05% | 1,927,481 | 30.35% | 1,342,491 | 27,438,155 | 18,259,396 | 3,473,613 | 1,439,458 | 4,261,360 | 590 |
19 | 2,302,925 | 97.19% | 2,238,241 | 40.34% | 1,335,335 | 20,079,043 | 11,386,392 | 2,563,472 | 1,296,522 | 4,816,482 | 493 |
20 | 2,302,136 | 96.67% | 2,225,362 | 22.40% | 1,726,881 | 39,063,557 | 26,082,919 | 5,242,624 | 2,174,525 | 5,553,666 | 818 |
21 | 1,300,810 | 96.35% | 1,253,315 | 27.20% | 912,413 | 19,754,539 | 13,720,482 | 2,265,691 | 924,804 | 2,836,642 | 352 |
22 | 1,320,415 | 96.93% | 1,279,878 | 24.26% | 969,380 | 22,530,006 | 15,532,204 | 2,742,149 | 1,161,541 | 3,086,644 | 432 |
23 | 4,038,941 | 97.18% | 3,925,079 | 38.16% | 2,427,269 | 50,797,424 | 33,453,499 | 7,069,956 | 2,871,948 | 7,391,188 | 1109 |
24 | 1,359,113 | 96.09% | 1,305,981 | 24.20% | 989,934 | 18,056,452 | 10,532,393 | 2,488,816 | 1,225,086 | 3,798,095 | 431 |
47,114,953 | 96.69% | 45,553,708 | 0.289644616 | 32,352,570 | 15074 | ||||||
PGP1 26 Device V8 Random 10-mer Simplified Tag (mapped by BWA)
sample | Raw_reads | Mapping_rate | Mappable_reads | Clonal_rate | unique | contig | 1+ | 1 | 2 | 3 | 4+ | contig |
1 | 690,277 | 96.70% | 667,502 | 44.81% | 368,394 | 162 | 5,636,948 | 3,220,301 | 681,567 | 355,998 | 1,371,366 | 162 |
2 | 573,767 | 96.32% | 552,669 | 31.63% | 377,860 | 217 | 6,165,818 | 3,264,608 | 816,265 | 450,841 | 1,625,894 | 217 |
3 | 764,141 | 96.41% | 736,674 | 41.70% | 429,481 | 215 | 6,452,790 | 3,395,150 | 831,767 | 458,764 | 1,752,274 | 215 |
4 | 572,351 | 95.85% | 548,627 | 32.58% | 369,884 | 203 | 6,030,417 | 3,250,837 | 788,447 | 429,731 | 1,545,798 | 203 |
5 | 688,067 | 95.85% | 659,504 | 41.75% | 384,161 | 161 | 5,653,088 | 3,240,852 | 658,088 | 335,507 | 1,409,822 | 161 |
6 | 619,413 | 96.31% | 596,537 | 40.45% | 355,238 | 174 | 4,988,329 | 2,650,568 | 594,056 | 328,050 | 1,402,879 | 174 |
7 | 746,320 | 96.07% | 716,961 | 41.30% | 420,856 | 214 | 6,313,822 | 3,382,543 | 791,438 | 434,916 | 1,690,622 | 214 |
8 | 740,681 | 96.48% | 714,629 | 46.52% | 382,184 | 175 | 6,122,312 | 3,677,066 | 722,628 | 356,090 | 1,353,567 | 175 |
9 | 796,267 | 96.19% | 765,943 | 51.37% | 372,478 | 181 | 5,623,958 | 3,090,982 | 712,580 | 380,280 | 1,430,482 | 181 |
10 | 824,214 | 96.26% | 793,363 | 39.86% | 477,129 | 174 | 6,413,486 | 3,268,950 | 754,872 | 423,993 | 1,953,599 | 174 |
11 | 907,032 | 96.74% | 877,441 | 46.38% | 470,484 | 187 | 6,571,047 | 3,397,058 | 820,126 | 446,728 | 1,903,087 | 187 |
12 | 723,182 | 96.72% | 699,459 | 44.51% | 388,130 | 185 | 5,842,914 | 3,093,034 | 780,119 | 427,748 | 1,532,426 | 185 |
13 | 757,465 | 96.54% | 731,244 | 37.24% | 458,929 | 227 | 7,078,124 | 3,777,507 | 924,935 | 498,188 | 1,863,922 | 227 |
14 | 704,605 | 96.63% | 680,867 | 32.90% | 456,862 | 232 | 7,225,566 | 3,886,003 | 942,941 | 506,321 | 1,882,708 | 232 |
15 | 848,248 | 96.18% | 815,834 | 38.26% | 503,696 | 236 | 7,942,109 | 4,361,859 | 998,320 | 540,109 | 2,036,434 | 236 |
16 | 671,708 | 96.57% | 648,695 | 35.82% | 416,332 | 206 | 6,196,604 | 3,224,629 | 806,557 | 443,002 | 1,710,215 | 206 |
17 | 674,292 | 94.37% | 636,303 | 24.29% | 481,745 | 272 | 9,489,870 | 5,467,445 | 1,330,773 | 685,117 | 1,993,825 | 272 |
18 | 719,253 | 96.53% | 694,276 | 26.01% | 513,695 | 297 | 9,343,787 | 5,254,577 | 1,259,271 | 651,657 | 2,166,764 | 297 |
19 | 710,519 | 96.55% | 685,974 | 32.20% | 465,090 | 237 | 7,490,712 | 4,013,960 | 963,650 | 541,520 | 1,956,549 | 237 |
20 | 616,598 | 96.21% | 593,224 | 30.58% | 411,816 | 240 | 6,896,372 | 3,880,733 | 869,639 | 465,347 | 1,674,485 | 240 |
21 | 537,817 | 96.28% | 517,799 | 30.32% | 360,802 | 246 | 6,522,265 | 3,491,940 | 969,645 | 525,126 | 1,521,163 | 246 |
22 | 555,866 | 95.99% | 533,555 | 28.61% | 380,905 | 264 | 6,469,170 | 3,589,897 | 844,288 | 449,894 | 1,574,465 | 264 |
23 | 757,629 | 96.13% | 728,324 | 32.25% | 493,440 | 284 | 8,665,874 | 5,040,136 | 1,105,371 | 568,271 | 1,937,579 | 284 |
24 | 927,550 | 96.79% | 897,816 | 38.55% | 551,708 | 280 | 8,264,275 | 4,557,481 | 1,007,562 | 531,964 | 2,154,889 | 280 |
17,127,262 | 96.30% | 16,493,220 | 0.375887603 | 10,291,298 | 5269 | 5269 | ||||||
PGP1 26 Device V8 Random 10-mer Simplified Tag (mapped by Bowtie2)
sample | Raw_reads | Mapping_rate | Mappable_reads | Clonal_rate | unique | contig | 1+ | 1 | 2 | 3 | 4+ | contig | %Mito |
1 | 690,277 | 99.35% | 685,798 | 39.48% | 415,045 | 162 | 5,839,447 | 3,375,697 | 708,870 | 360,464 | 1,386,445 | 162 | 0.03% |
2 | 573,767 | 99.42% | 570,427 | 26.51% | 419,207 | 220 | 6,375,239 | 3,448,254 | 827,457 | 452,689 | 1,638,490 | 220 | 0.07% |
3 | 764,141 | 99.45% | 759,906 | 36.53% | 482,312 | 214 | 6,713,978 | 3,607,242 | 856,516 | 466,413 | 1,768,838 | 214 | 0.17% |
4 | 572,351 | 99.19% | 567,740 | 27.78% | 410,022 | 203 | 6,223,838 | 3,398,581 | 812,009 | 432,905 | 1,564,592 | 203 | 0.33% |
5 | 688,067 | 99.32% | 683,379 | 36.27% | 435,517 | 161 | 5,906,220 | 3,437,517 | 686,533 | 343,575 | 1,429,864 | 161 | 0.05% |
6 | 619,413 | 99.47% | 616,108 | 35.41% | 397,944 | 175 | 5,189,574 | 2,822,230 | 608,976 | 329,729 | 1,415,507 | 175 | 0.11% |
7 | 746,320 | 99.37% | 741,605 | 35.70% | 476,852 | 216 | 6,560,499 | 3,581,318 | 812,705 | 439,852 | 1,712,228 | 216 | 0.14% |
8 | 740,681 | 99.45% | 736,620 | 41.65% | 429,818 | 175 | 6,302,838 | 3,770,033 | 774,083 | 373,843 | 1,371,564 | 175 | 0.13% |
9 | 796,267 | 99.26% | 790,371 | 46.58% | 422,216 | 185 | 5,912,422 | 3,315,249 | 750,314 | 391,048 | 1,446,279 | 185 | 0.06% |
10 | 824,214 | 99.42% | 819,412 | 34.25% | 538,763 | 173 | 6,659,016 | 3,452,549 | 789,807 | 429,692 | 1,974,699 | 173 | 0.13% |
11 | 907,032 | 99.49% | 902,377 | 41.43% | 528,522 | 187 | 6,821,254 | 3,589,634 | 848,971 | 457,821 | 1,920,495 | 187 | 0.01% |
12 | 723,182 | 99.42% | 718,992 | 40.04% | 431,108 | 186 | 6,007,739 | 3,189,111 | 820,376 | 441,005 | 1,547,588 | 186 | 0.05% |
13 | 757,465 | 99.40% | 752,939 | 32.25% | 510,116 | 226 | 7,312,418 | 3,957,401 | 949,337 | 506,277 | 1,885,676 | 226 | 0.11% |
14 | 704,605 | 99.47% | 700,873 | 28.40% | 501,825 | 236 | 7,414,385 | 4,036,453 | 962,666 | 505,719 | 1,901,834 | 236 | 0.04% |
15 | 848,248 | 99.36% | 842,826 | 32.82% | 566,211 | 237 | 8,209,359 | 4,558,756 | 1,039,097 | 548,348 | 2,057,758 | 237 | 0.02% |
16 | 671,708 | 99.48% | 668,214 | 30.39% | 465,144 | 207 | 6,411,985 | 3,394,381 | 825,615 | 450,626 | 1,728,994 | 207 | 0.09% |
17 | 674,292 | 99.00% | 667,560 | 20.75% | 529,041 | 271 | 9,834,370 | 5,669,224 | 1,397,474 | 711,518 | 2,043,394 | 271 | 0.12% |
18 | 719,253 | 99.46% | 715,397 | 21.75% | 559,798 | 293 | 9,533,510 | 5,373,414 | 1,291,891 | 665,480 | 2,190,928 | 293 | 0.08% |
19 | 710,519 | 99.45% | 706,632 | 27.78% | 510,330 | 238 | 7,693,018 | 4,174,384 | 985,573 | 543,665 | 1,974,396 | 238 | 0.19% |
20 | 616,598 | 99.41% | 612,983 | 26.13% | 452,811 | 239 | 7,116,202 | 4,053,692 | 887,895 | 473,315 | 1,694,875 | 239 | 0.04% |
21 | 537,817 | 99.41% | 534,664 | 26.32% | 393,940 | 248 | 6,713,399 | 3,640,490 | 986,162 | 533,538 | 1,538,588 | 248 | 0.18% |
22 | 555,866 | 99.37% | 552,346 | 24.06% | 419,452 | 267 | 6,674,472 | 3,745,222 | 864,374 | 456,875 | 1,597,321 | 267 | 0.07% |
23 | 757,629 | 99.41% | 753,167 | 27.27% | 547,778 | 285 | 8,975,868 | 5,274,165 | 1,149,491 | 580,488 | 1,957,153 | 285 | 0.16% |
24 | 927,550 | 99.47% | 922,657 | 33.11% | 617,165 | 278 | 8,519,122 | 4,747,103 | 1,043,645 | 541,589 | 2,174,018 | 278 | 0.08% |
17,127,262 | 99.39% | 17,022,993 | 0.326725564 | 11,460,937 | 5282 |
PGP1 27 Device V9 (Single Denaturation Chamber) Random 8-mer Simplified Tag (mapped by BWA)
sample | Raw_reads | Mapping_rate | Mappable_reads | Clonal_rate | unique | 1+ | 1 | 2 | 3 | 4+ | contig |
1 | 1,480,684 | 85.07% | 1,259,630 | 11.35% | 1,116,662 | 28,202,462 | 17,827,314 | 4,461,358 | 2,002,027 | 3,900,784 | 1172 |
2 | 2,476,110 | 84.84% | 2,100,648 | 10.62% | 1,877,559 | 50,199,659 | 32,697,547 | 7,891,411 | 3,466,986 | 6,133,949 | 2052 |
3 | 2,076,640 | 84.70% | 1,758,960 | 13.46% | 1,522,204 | 36,562,106 | 22,615,204 | 5,731,936 | 2,678,237 | 5,525,374 | 1569 |
4 | 2,585,471 | 84.95% | 2,196,309 | 18.85% | 1,782,305 | 38,366,483 | 23,350,637 | 5,558,526 | 2,683,868 | 6,761,756 | 1575 |
5 | 2,509,697 | 84.99% | 2,132,876 | 16.38% | 1,783,511 | 38,695,018 | 23,346,934 | 5,711,895 | 2,755,220 | 6,868,105 | 1557 |
6 | 2,507,716 | 83.81% | 2,101,637 | 11.55% | 1,858,898 | 48,577,207 | 30,697,865 | 8,089,904 | 3,572,249 | 6,205,117 | 1864 |
7 | 1,588,435 | 85.30% | 1,354,986 | 11.82% | 1,194,827 | 30,546,845 | 19,599,233 | 4,750,889 | 2,151,443 | 4,034,198 | 1213 |
8 | 1,830,362 | 84.94% | 1,554,642 | 13.78% | 1,340,412 | 31,477,052 | 19,449,511 | 4,799,064 | 2,251,458 | 4,964,223 | 1295 |
9 | 1,538,587 | 84.87% | 1,305,738 | 11.89% | 1,150,486 | 27,875,370 | 16,930,165 | 4,554,439 | 2,150,968 | 4,227,130 | 1176 |
10 | 1,803,655 | 83.93% | 1,513,729 | 17.81% | 1,244,134 | 26,099,118 | 14,937,914 | 4,111,228 | 2,073,787 | 4,963,100 | 1178 |
11 | 685,896 | 82.96% | 568,994 | 9.24% | 516,419 | 14,515,013 | 9,575,229 | 2,369,611 | 1,003,588 | 1,555,774 | 564 |
12 | 1,675,696 | 84.09% | 1,409,135 | 18.18% | 1,152,954 | 25,261,348 | 15,210,431 | 3,886,271 | 1,852,526 | 4,299,523 | 1092 |
13 | 801,322 | 83.09% | 665,855 | 8.66% | 608,192 | 16,626,916 | 10,639,944 | 2,770,778 | 1,225,417 | 1,981,825 | 692 |
14 | 1,237,749 | 84.48% | 1,045,664 | 14.18% | 897,389 | 21,610,252 | 13,211,504 | 3,549,909 | 1,643,587 | 3,193,289 | 948 |
15 | 1,795,853 | 84.39% | 1,515,525 | 12.90% | 1,320,022 | 31,113,300 | 18,820,522 | 4,986,232 | 2,367,286 | 4,924,145 | 1368 |
16 | 1,388,962 | 83.72% | 1,162,800 | 11.81% | 1,025,473 | 24,626,927 | 14,722,640 | 4,090,553 | 1,951,357 | 3,850,085 | 1111 |
17 | 898,337 | 83.76% | 752,461 | 8.90% | 685,492 | 19,839,335 | 13,493,328 | 3,049,461 | 1,278,103 | 2,002,794 | 714 |
18 | 2,183,939 | 84.70% | 1,849,691 | 12.36% | 1,621,069 | 45,154,767 | 32,652,070 | 5,432,330 | 2,257,855 | 4,796,727 | 1321 |
19 | 2,926,888 | 86.70% | 2,537,523 | 21.26% | 1,998,046 | 41,607,868 | 25,394,175 | 5,972,928 | 2,840,457 | 7,383,998 | 1736 |
20 | 2,816,541 | 85.39% | 2,404,954 | 15.92% | 2,022,085 | 50,893,687 | 35,550,833 | 6,281,460 | 2,616,744 | 6,428,559 | 1540 |
21 | 2,564,937 | 84.85% | 2,176,410 | 20.53% | 1,729,593 | 37,400,147 | 24,062,720 | 4,855,664 | 2,251,674 | 6,213,763 | 1393 |
22 | 2,287,061 | 84.89% | 1,941,550 | 24.02% | 1,475,190 | 29,662,766 | 18,667,830 | 3,780,716 | 1,797,528 | 5,401,079 | 1122 |
23 | 1,717,383 | 85.58% | 1,469,733 | 18.70% | 1,194,893 | 27,798,882 | 18,740,085 | 3,488,855 | 1,541,205 | 4,013,052 | 960 |
24 | 973,638 | 87.05% | 847,546 | 20.08% | 677,359 | 14,139,245 | 8,532,615 | 2,085,848 | 988,931 | 2,521,439 | 603 |
44,351,559 | 84.84% | 37,626,996 | 0.154775334 | 31,795,173 | 29815 | ||||||