Daniel:Notebook/Haplotyping/DataMap

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Data Map

Back to Notebook

This page contains the data map for the haplotyping project, specifically tables that outline locations of each of the data types.

Hi-C Data

Bacterial Artificial Chromosome (BAC) Data

File Type System Path File(s)
VCF-All Genome Miner /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/filtered_vcf pgp1_variants_bac_all.Indx73to96.vcf
VCF-by chromosome XXXX XXXX XXXX
bam files-original Genome Miner /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/fixed.bam PGP1_***BacPool_Indx**.fixed.bam
bam files-contigs Genome Miner /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/bacContigs Indx**.bacs.bam
bam files-by chrom Genome Miner /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/bams_by_chromosome chr*/chr*.Indx**.bam
HAIRS-raw Genome Miner /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/HAIRS chr*/chr*.Indx**.bam
HAIRS-merge Genome Miner /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/HAIRS chr*/fragments.chr*.bac.txt
haplotypes Genome Miner /media/LTS_33T/KZ_LTS33T/PGP1_BacPool/hapcut/haplotypes haplotype.chr*.bac.txt