Andrew:Notebook/AR150618 C1

From ZhangLabWiki
Revision as of 17:01, 9 September 2015 by >Andrew (→‎CNV profiling)
Jump to navigation Jump to search

31 nL MDA on C1 with GM12878

Overview

Motivation

File:AR150618 motivation.png

Reagents

File:AR150618 reagents.jpg

Protocol

File:Protocol Worksheet AR150618 C1 v1-1.png

File:Protocol Worksheet AR150618 C1 v1-2.png

File:Protocol Worksheet AR150618 C1 v1-3.png

File:AR150618 thermalProfile.png

Results

Cell capture

Initials Date (YYMMDD) Chamber Well i7 i5 i7 sequence (RC) i5 barcode SampleID Full barcode Number LiveOrDead Notes
AR 150618 Ch03 A01 N701 S502 TAAGGCGA CTCTCTAT AR-150618-Ch03-A01-N701-S502 TAAGGCGA-CTCTCTAT 0 na na
AR 150618 Ch02 A02 N702 S502 CGTACTAG CTCTCTAT AR-150618-Ch02-A02-N702-S502 CGTACTAG-CTCTCTAT 0 na na
AR 150618 Ch01 A03 N703 S502 AGGCAGAA CTCTCTAT AR-150618-Ch01-A03-N703-S502 AGGCAGAA-CTCTCTAT 0 na na
AR 150618 Ch49 A04 N704 S502 TCCTGAGC CTCTCTAT AR-150618-Ch49-A04-N704-S502 TCCTGAGC-CTCTCTAT 0 na na
AR 150618 Ch50 A05 N705 S502 GGACTCCT CTCTCTAT AR-150618-Ch50-A05-N705-S502 GGACTCCT-CTCTCTAT 0 na na
AR 150618 Ch51 A06 N706 S502 TAGGCATG CTCTCTAT AR-150618-Ch51-A06-N706-S502 TAGGCATG-CTCTCTAT 0 na na
AR 150618 Ch06 A07 N707 S502 CTCTCTAC CTCTCTAT AR-150618-Ch06-A07-N707-S502 CTCTCTAC-CTCTCTAT 0 na na
AR 150618 Ch05 A08 N710 S502 CGAGGCTG CTCTCTAT AR-150618-Ch05-A08-N710-S502 CGAGGCTG-CTCTCTAT 0 na na
AR 150618 Ch04 A09 N711 S502 AAGAGGCA CTCTCTAT AR-150618-Ch04-A09-N711-S502 AAGAGGCA-CTCTCTAT 0 na na
AR 150618 Ch52 A10 N712 S502 GTAGAGGA CTCTCTAT AR-150618-Ch52-A10-N712-S502 GTAGAGGA-CTCTCTAT 0 na na
AR 150618 Ch53 A11 N714 S502 GCTCATGA CTCTCTAT AR-150618-Ch53-A11-N714-S502 GCTCATGA-CTCTCTAT 0 na na
AR 150618 Ch54 A12 N715 S502 ATCTCAGG CTCTCTAT AR-150618-Ch54-A12-N715-S502 ATCTCAGG-CTCTCTAT 0 na na
AR 150618 Ch09 B01 N701 S503 TAAGGCGA TATCCTCT AR-150618-Ch09-B01-N701-S503 TAAGGCGA-TATCCTCT 0 na na
AR 150618 Ch08 B02 N702 S503 CGTACTAG TATCCTCT AR-150618-Ch08-B02-N702-S503 CGTACTAG-TATCCTCT 0 na na
AR 150618 Ch07 B03 N703 S503 AGGCAGAA TATCCTCT AR-150618-Ch07-B03-N703-S503 AGGCAGAA-TATCCTCT 1 dead na
AR 150618 Ch55 B04 N704 S503 TCCTGAGC TATCCTCT AR-150618-Ch55-B04-N704-S503 TCCTGAGC-TATCCTCT 0 na na
AR 150618 Ch56 B05 N705 S503 GGACTCCT TATCCTCT AR-150618-Ch56-B05-N705-S503 GGACTCCT-TATCCTCT 0 na na
AR 150618 Ch57 B06 N706 S503 TAGGCATG TATCCTCT AR-150618-Ch57-B06-N706-S503 TAGGCATG-TATCCTCT 0 na na
AR 150618 Ch12 B07 N707 S503 CTCTCTAC TATCCTCT AR-150618-Ch12-B07-N707-S503 CTCTCTAC-TATCCTCT 1 dead na
AR 150618 Ch11 B08 N710 S503 CGAGGCTG TATCCTCT AR-150618-Ch11-B08-N710-S503 CGAGGCTG-TATCCTCT 3 dead na
AR 150618 Ch10 B09 N711 S503 AAGAGGCA TATCCTCT AR-150618-Ch10-B09-N711-S503 AAGAGGCA-TATCCTCT 1 dead weak
AR 150618 Ch58 B10 N712 S503 GTAGAGGA TATCCTCT AR-150618-Ch58-B10-N712-S503 GTAGAGGA-TATCCTCT 0 na na
AR 150618 Ch59 B11 N714 S503 GCTCATGA TATCCTCT AR-150618-Ch59-B11-N714-S503 GCTCATGA-TATCCTCT 0 na na
AR 150618 Ch60 B12 N715 S503 ATCTCAGG TATCCTCT AR-150618-Ch60-B12-N715-S503 ATCTCAGG-TATCCTCT 0 na na
AR 150618 Ch15 C01 N701 S505 TAAGGCGA GTAAGGAG AR-150618-Ch15-C01-N701-S505 TAAGGCGA-GTAAGGAG 2 dead na
AR 150618 Ch14 C02 N702 S505 CGTACTAG GTAAGGAG AR-150618-Ch14-C02-N702-S505 CGTACTAG-GTAAGGAG 1 dead lumpy
AR 150618 Ch13 C03 N703 S505 AGGCAGAA GTAAGGAG AR-150618-Ch13-C03-N703-S505 AGGCAGAA-GTAAGGAG 1 live extravasating
AR 150618 Ch61 C04 N704 S505 TCCTGAGC GTAAGGAG AR-150618-Ch61-C04-N704-S505 TCCTGAGC-GTAAGGAG 1 dead weak
AR 150618 Ch62 C05 N705 S505 GGACTCCT GTAAGGAG AR-150618-Ch62-C05-N705-S505 GGACTCCT-GTAAGGAG 0 na na
AR 150618 Ch63 C06 N706 S505 TAGGCATG GTAAGGAG AR-150618-Ch63-C06-N706-S505 TAGGCATG-GTAAGGAG 0 na na
AR 150618 Ch18 C07 N707 S505 CTCTCTAC GTAAGGAG AR-150618-Ch18-C07-N707-S505 CTCTCTAC-GTAAGGAG 1 both extravasating
AR 150618 Ch17 C08 N710 S505 CGAGGCTG GTAAGGAG AR-150618-Ch17-C08-N710-S505 CGAGGCTG-GTAAGGAG 1 live extravasating
AR 150618 Ch16 C09 N711 S505 AAGAGGCA GTAAGGAG AR-150618-Ch16-C09-N711-S505 AAGAGGCA-GTAAGGAG 1 both na
AR 150618 Ch64 C10 N712 S505 GTAGAGGA GTAAGGAG AR-150618-Ch64-C10-N712-S505 GTAGAGGA-GTAAGGAG 0 na na
AR 150618 Ch65 C11 N714 S505 GCTCATGA GTAAGGAG AR-150618-Ch65-C11-N714-S505 GCTCATGA-GTAAGGAG 0 na na
AR 150618 Ch66 C12 N715 S505 ATCTCAGG GTAAGGAG AR-150618-Ch66-C12-N715-S505 ATCTCAGG-GTAAGGAG 0 na na
AR 150618 Ch21 D01 N701 S506 TAAGGCGA ACTGCATA AR-150618-Ch21-D01-N701-S506 TAAGGCGA-ACTGCATA 1 live extravasating
AR 150618 Ch20 D02 N702 S506 CGTACTAG ACTGCATA AR-150618-Ch20-D02-N702-S506 CGTACTAG-ACTGCATA 1 dead na
AR 150618 Ch19 D03 N703 S506 AGGCAGAA ACTGCATA AR-150618-Ch19-D03-N703-S506 AGGCAGAA-ACTGCATA 0 na na
AR 150618 Ch67 D04 N704 S506 TCCTGAGC ACTGCATA AR-150618-Ch67-D04-N704-S506 TCCTGAGC-ACTGCATA 0 na na
AR 150618 Ch68 D05 N705 S506 GGACTCCT ACTGCATA AR-150618-Ch68-D05-N705-S506 GGACTCCT-ACTGCATA 0 na na
AR 150618 Ch69 D06 N706 S506 TAGGCATG ACTGCATA AR-150618-Ch69-D06-N706-S506 TAGGCATG-ACTGCATA 0 na na
AR 150618 Ch24 D07 N707 S506 CTCTCTAC ACTGCATA AR-150618-Ch24-D07-N707-S506 CTCTCTAC-ACTGCATA 1 dead extravasating
AR 150618 Ch23 D08 N710 S506 CGAGGCTG ACTGCATA AR-150618-Ch23-D08-N710-S506 CGAGGCTG-ACTGCATA 1 dead na
AR 150618 Ch22 D09 N711 S506 AAGAGGCA ACTGCATA AR-150618-Ch22-D09-N711-S506 AAGAGGCA-ACTGCATA 1 live extravasating
AR 150618 Ch70 D10 N712 S506 GTAGAGGA ACTGCATA AR-150618-Ch70-D10-N712-S506 GTAGAGGA-ACTGCATA 1 dead extravasating
AR 150618 Ch71 D11 N714 S506 GCTCATGA ACTGCATA AR-150618-Ch71-D11-N714-S506 GCTCATGA-ACTGCATA 0 na na
AR 150618 Ch72 D12 N715 S506 ATCTCAGG ACTGCATA AR-150618-Ch72-D12-N715-S506 ATCTCAGG-ACTGCATA 0 na na
AR 150618 Ch25 E01 N701 S507 TAAGGCGA AAGGAGTA AR-150618-Ch25-E01-N701-S507 TAAGGCGA-AAGGAGTA 1 live weak
AR 150618 Ch26 E02 N702 S507 CGTACTAG AAGGAGTA AR-150618-Ch26-E02-N702-S507 CGTACTAG-AAGGAGTA 0 na na
AR 150618 Ch27 E03 N703 S507 AGGCAGAA AAGGAGTA AR-150618-Ch27-E03-N703-S507 AGGCAGAA-AAGGAGTA 0 na na
AR 150618 Ch75 E04 N704 S507 TCCTGAGC AAGGAGTA AR-150618-Ch75-E04-N704-S507 TCCTGAGC-AAGGAGTA 0 na na
AR 150618 Ch74 E05 N705 S507 GGACTCCT AAGGAGTA AR-150618-Ch74-E05-N705-S507 GGACTCCT-AAGGAGTA 1 live extravasating
AR 150618 Ch73 E06 N706 S507 TAGGCATG AAGGAGTA AR-150618-Ch73-E06-N706-S507 TAGGCATG-AAGGAGTA 0 na na
AR 150618 Ch28 E07 N707 S507 CTCTCTAC AAGGAGTA AR-150618-Ch28-E07-N707-S507 CTCTCTAC-AAGGAGTA 1 live weak
AR 150618 Ch29 E08 N710 S507 CGAGGCTG AAGGAGTA AR-150618-Ch29-E08-N710-S507 CGAGGCTG-AAGGAGTA 1 live extravasating
AR 150618 Ch30 E09 N711 S507 AAGAGGCA AAGGAGTA AR-150618-Ch30-E09-N711-S507 AAGAGGCA-AAGGAGTA 1 live weak
AR 150618 Ch78 E10 N712 S507 GTAGAGGA AAGGAGTA AR-150618-Ch78-E10-N712-S507 GTAGAGGA-AAGGAGTA 0 na na
AR 150618 Ch77 E11 N714 S507 GCTCATGA AAGGAGTA AR-150618-Ch77-E11-N714-S507 GCTCATGA-AAGGAGTA 1 dead weak
AR 150618 Ch76 E12 N715 S507 ATCTCAGG AAGGAGTA AR-150618-Ch76-E12-N715-S507 ATCTCAGG-AAGGAGTA 0 na na
AR 150618 Ch31 F01 N701 S508 TAAGGCGA CTAAGCCT AR-150618-Ch31-F01-N701-S508 TAAGGCGA-CTAAGCCT 2 dead na
AR 150618 Ch32 F02 N702 S508 CGTACTAG CTAAGCCT AR-150618-Ch32-F02-N702-S508 CGTACTAG-CTAAGCCT 0 na na
AR 150618 Ch33 F03 N703 S508 AGGCAGAA CTAAGCCT AR-150618-Ch33-F03-N703-S508 AGGCAGAA-CTAAGCCT 1 dead na
AR 150618 Ch81 F04 N704 S508 TCCTGAGC CTAAGCCT AR-150618-Ch81-F04-N704-S508 TCCTGAGC-CTAAGCCT 0 na na
AR 150618 Ch80 F05 N705 S508 GGACTCCT CTAAGCCT AR-150618-Ch80-F05-N705-S508 GGACTCCT-CTAAGCCT 1 dead na
AR 150618 Ch79 F06 N706 S508 TAGGCATG CTAAGCCT AR-150618-Ch79-F06-N706-S508 TAGGCATG-CTAAGCCT 1 dead extravasating
AR 150618 Ch34 F07 N707 S508 CTCTCTAC CTAAGCCT AR-150618-Ch34-F07-N707-S508 CTCTCTAC-CTAAGCCT 1 live weak
AR 150618 Ch35 F08 N710 S508 CGAGGCTG CTAAGCCT AR-150618-Ch35-F08-N710-S508 CGAGGCTG-CTAAGCCT 2 live na
AR 150618 Ch36 F09 N711 S508 AAGAGGCA CTAAGCCT AR-150618-Ch36-F09-N711-S508 AAGAGGCA-CTAAGCCT 0 na na
AR 150618 Ch84 F10 N712 S508 GTAGAGGA CTAAGCCT AR-150618-Ch84-F10-N712-S508 GTAGAGGA-CTAAGCCT 0 na na
AR 150618 Ch83 F11 N714 S508 GCTCATGA CTAAGCCT AR-150618-Ch83-F11-N714-S508 GCTCATGA-CTAAGCCT 0 na na
AR 150618 Ch82 F12 N715 S508 ATCTCAGG CTAAGCCT AR-150618-Ch82-F12-N715-S508 ATCTCAGG-CTAAGCCT 1 live extravasating
AR 150618 Ch37 G01 N701 S510 TAAGGCGA CGTCTAAT AR-150618-Ch37-G01-N701-S510 TAAGGCGA-CGTCTAAT 0 na na
AR 150618 Ch38 G02 N702 S510 CGTACTAG CGTCTAAT AR-150618-Ch38-G02-N702-S510 CGTACTAG-CGTCTAAT 0 dead na
AR 150618 Ch39 G03 N703 S510 AGGCAGAA CGTCTAAT AR-150618-Ch39-G03-N703-S510 AGGCAGAA-CGTCTAAT 1 live na
AR 150618 Ch87 G04 N704 S510 TCCTGAGC CGTCTAAT AR-150618-Ch87-G04-N704-S510 TCCTGAGC-CGTCTAAT 0 na na
AR 150618 Ch86 G05 N705 S510 GGACTCCT CGTCTAAT AR-150618-Ch86-G05-N705-S510 GGACTCCT-CGTCTAAT 1 dead na
AR 150618 Ch85 G06 N706 S510 TAGGCATG CGTCTAAT AR-150618-Ch85-G06-N706-S510 TAGGCATG-CGTCTAAT 0 na na
AR 150618 Ch40 G07 N707 S510 CTCTCTAC CGTCTAAT AR-150618-Ch40-G07-N707-S510 CTCTCTAC-CGTCTAAT 3 dead na
AR 150618 Ch41 G08 N710 S510 CGAGGCTG CGTCTAAT AR-150618-Ch41-G08-N710-S510 CGAGGCTG-CGTCTAAT 1 dead na
AR 150618 Ch42 G09 N711 S510 AAGAGGCA CGTCTAAT AR-150618-Ch42-G09-N711-S510 AAGAGGCA-CGTCTAAT 1 dead extravasating
AR 150618 Ch90 G10 N712 S510 GTAGAGGA CGTCTAAT AR-150618-Ch90-G10-N712-S510 GTAGAGGA-CGTCTAAT 2 both na
AR 150618 Ch89 G11 N714 S510 GCTCATGA CGTCTAAT AR-150618-Ch89-G11-N714-S510 GCTCATGA-CGTCTAAT 1 both weak
AR 150618 Ch88 G12 N715 S510 ATCTCAGG CGTCTAAT AR-150618-Ch88-G12-N715-S510 ATCTCAGG-CGTCTAAT 1 dead na
AR 150618 Ch43 H01 N701 S511 TAAGGCGA TCTCTCCG AR-150618-Ch43-H01-N701-S511 TAAGGCGA-TCTCTCCG 1 dead extravasating
AR 150618 Ch44 H02 N702 S511 CGTACTAG TCTCTCCG AR-150618-Ch44-H02-N702-S511 CGTACTAG-TCTCTCCG 0 na debris
AR 150618 Ch45 H03 N703 S511 AGGCAGAA TCTCTCCG AR-150618-Ch45-H03-N703-S511 AGGCAGAA-TCTCTCCG 1 live extravasating
AR 150618 Ch93 H04 N704 S511 TCCTGAGC TCTCTCCG AR-150618-Ch93-H04-N704-S511 TCCTGAGC-TCTCTCCG 0 na na
AR 150618 Ch92 H05 N705 S511 GGACTCCT TCTCTCCG AR-150618-Ch92-H05-N705-S511 GGACTCCT-TCTCTCCG 1 live bright
AR 150618 Ch91 H06 N706 S511 TAGGCATG TCTCTCCG AR-150618-Ch91-H06-N706-S511 TAGGCATG-TCTCTCCG 0 both debris
AR 150618 Ch46 H07 N707 S511 CTCTCTAC TCTCTCCG AR-150618-Ch46-H07-N707-S511 CTCTCTAC-TCTCTCCG 1 dead na
AR 150618 Ch47 H08 N710 S511 CGAGGCTG TCTCTCCG AR-150618-Ch47-H08-N710-S511 CGAGGCTG-TCTCTCCG 1 both extravasating
AR 150618 Ch48 H09 N711 S511 AAGAGGCA TCTCTCCG AR-150618-Ch48-H09-N711-S511 AAGAGGCA-TCTCTCCG 0 na na
AR 150618 Ch96 H10 N712 S511 GTAGAGGA TCTCTCCG AR-150618-Ch96-H10-N712-S511 GTAGAGGA-TCTCTCCG 1 live extravasating
AR 150618 Ch95 H11 N714 S511 GCTCATGA TCTCTCCG AR-150618-Ch95-H11-N714-S511 GCTCATGA-TCTCTCCG 1 live extravasating
AR 150618 Ch94 H12 N715 S511 ATCTCAGG TCTCTCCG AR-150618-Ch94-H12-N715-S511 ATCTCAGG-TCTCTCCG 1 dead na

Nextera PCR

Ran Nextera PCR on Eppendorf qPCR machine

File:AR150618 NexteraPCR.png

Size selection

File:AR150618 C1 gels.png

Sequencing

Hasty Lab Miseq ' ' ' ' ' ' ' ' '
Kit Provider: Kun Zhang Lab
6/24/2015
Loading Concentration: 26.5 pM
Sample ID Index Sequence # of Reads Run Type, Minmum BP Library Size Gel Image Read 1 Sequencing Primer Index Primer Read 2 Sequencing Primer Notes
INITIAL-PROJECT-SAMPLE-DATE-Index CGTGCA Million SE/PE, 36+6+36 SIZE RANGE (BP) Link Name Name Name Labeling, pooling, quantification, etc
AR-150618-Ch03-A01-N701-S502 TAAGGCGA-CTCTCTAT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch02-A02-N702-S502 CGTACTAG-CTCTCTAT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch07-B03-N703-S503 AGGCAGAA-TATCCTCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch12-B07-N707-S503 CTCTCTAC-TATCCTCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch13-C03-N703-S505 AGGCAGAA-GTAAGGAG 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch17-C08-N710-S505 CGAGGCTG-GTAAGGAG 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch21-D01-N701-S506 TAAGGCGA-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch20-D02-N702-S506 CGTACTAG-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch24-D07-N707-S506 CTCTCTAC-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch23-D08-N710-S506 CGAGGCTG-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch22-D09-N711-S506 AAGAGGCA-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch70-D10-N712-S506 GTAGAGGA-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch74-E05-N705-S507 GGACTCCT-AAGGAGTA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch29-E08-N710-S507 CGAGGCTG-AAGGAGTA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch33-F03-N703-S508 AGGCAGAA-CTAAGCCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch80-F05-N705-S508 GGACTCCT-CTAAGCCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch79-F06-N706-S508 TAGGCATG-CTAAGCCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch82-F12-N715-S508 ATCTCAGG-CTAAGCCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch39-G03-N703-S510 AGGCAGAA-CGTCTAAT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch45-H03-N703-S511 AGGCAGAA-TCTCTCCG 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18

Screening

File:AR150618 libraryComplexities.jpg


CNV profiling

File:AR-150618-Ch02-A02-N702-S502.all.png File:AR-150618-Ch03-A01-N701-S502.all.png File:AR-150618-Ch07-B03-N703-S503.all.png File:AR-150618-Ch12-B07-N707-S503.all.png File:AR-150618-Ch13-C03-N703-S505.all.png File:AR-150618-Ch17-C08-N710-S505.all.png File:AR-150618-Ch20-D02-N702-S506.all.png File:AR-150618-Ch21-D01-N701-S506.all.png File:AR-150618-Ch22-D09-N711-S506.all.png File:AR-150618-Ch23-D08-N710-S506.all.png File:AR-150618-Ch24-D07-N707-S506.all.png File:AR-150618-Ch29-E08-N710-S507.all.png File:AR-150618-Ch33-F03-N703-S508.all.png File:AR-150618-Ch39-G03-N703-S510.all.png File:AR-150618-Ch45-H03-N703-S511.all.png File:AR-150618-Ch70-D10-N712-S506.all.png File:AR-150618-Ch74-E05-N705-S507.all.png File:AR-150618-Ch79-F06-N706-S508.all.png File:AR-150618-Ch80-F05-N705-S508.all.png File:AR-150618-Ch82-F12-N715-S508.all.png

Lorenz Curves

File:AR-150618-Ch02-A02-N702-S502 lorenz.png File:AR-150618-Ch03-A01-N701-S502 lorenz.png File:AR-150618-Ch07-B03-N703-S503 lorenz.png File:AR-150618-Ch12-B07-N707-S503 lorenz.png File:AR-150618-Ch13-C03-N703-S505 lorenz.png File:AR-150618-Ch17-C08-N710-S505 lorenz.png File:AR-150618-Ch20-D02-N702-S506 lorenz.png File:AR-150618-Ch21-D01-N701-S506 lorenz.png File:AR-150618-Ch22-D09-N711-S506 lorenz.png File:AR-150618-Ch23-D08-N710-S506 lorenz.png File:AR-150618-Ch24-D07-N707-S506 lorenz.png File:AR-150618-Ch29-E08-N710-S507 lorenz.png File:AR-150618-Ch33-F03-N703-S508 lorenz.png File:AR-150618-Ch39-G03-N703-S510 lorenz.png File:AR-150618-Ch45-H03-N703-S511 lorenz.png File:AR-150618-Ch70-D10-N712-S506 lorenz.png File:AR-150618-Ch74-E05-N705-S507 lorenz.png File:AR-150618-Ch79-F06-N706-S508 lorenz.png File:AR-150618-Ch80-F05-N705-S508 lorenz.png File:AR-150618-Ch82-F12-N715-S508 lorenz.png