AlanFung:LabNotes/2015/2015-7-14

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Revision as of 17:42, 14 July 2015 by >Alan6017518 (Created page with "==Swift vs. Kapa== * We are interested in the performance of the Swift Bioscience Methyl-Seq DNa library kit * Since we have WGB libraries made using Kapa we can compare swif...")
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Swift vs. Kapa

  • We are interested in the performance of the Swift Bioscience Methyl-Seq DNa library kit
  • Since we have WGB libraries made using Kapa we can compare swift against it.
  • Experiment was done
  • Data analysis was done by Dr. Zhang

Samples

  • We only have 12 reactions from the swift methyl-seq kit and Dana needs to use it for her project so I can work on 4 samples.
  • After discussing with Dinh I am going to pick 1x tumor 1x plasma sample and 2x NC plasma
  • I will pick the ones that have relatively low % trimmed (percentage of adapters being trimmed) and high % mapped rate.