Ns126:Calendar/NOTES/2015-8-31

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Revision as of 22:23, 4 September 2015 by >Shicheng
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  • liftover epigenetic annotation from hg18 to hg19
./liftOver Hic.topological.domain.hESC.hg18.bed hg18ToHg19.over.chain Hic.topological.domain.hESC.hg19.bed tmp
./liftOver Hic.topological.domain.IMR90.hg18.bed  hg18ToHg19.over.chain Hic.topological.domain.IMR90.hg19.bed tmp
./liftOver Hic.boundary.IMR90.hg18.bed hg18ToHg19.over.chain Hic.boundary.IMR90.hg19.bed tmp
./liftOver Hic.boundary.hESC.hg18.bed hg18ToHg19.over.chain Hic.boundary.hESC.hg19.bed tmp
./liftOver Hic.common.boundary.hESC.IMR90.hg18.bed hg18ToHg19.over.chain Hic.common.boundary.hESC.IMR90.hg19.bed tmp
ID Type
Colon-primary-tumor Tumor
HCT116 Tumor
WB-centenarian WB
WB-middle-age WB
WB-new-born WB
STL002AO-01 Vessel
STL003AO-01 Vessel
STL001TH-01 Thymus
N37-Stomach Stomach
STL002GA-01 Stomach
STL001SX-01 Spleen
STL002SX-01 Spleen
STL003SX-01 Spleen
STL002PA-01 Pancreas
N37-Pancreas Pancreas
STL003PA-01 Pancreas
STL002OV-01 Ovary
N37-SM muscle
STL001PO-01 muscle
STL002PO-01 muscle
STL003PO-01 muscle
N37-Lung Lung
STL001LG-01 Lung
STL002LG-01 Lung
N37-Liver Liver
STL011LI-01 Liver
STL002AD-01 Kidney
STL003AD-01 Kidney
N37-SI Intestine
STL001SB-01 Intestine
STL002SB-01 Intestine
STL003SB-01 Intestine
N37-Heart Heart
STL001LV-01 Heart
STL001RV-01 Heart
STL003LV-01 Heart
STL003RA-01 Heart
STL003RV-01 Heart
methylC-seq-h1+bmp4-r1 H1
methylC-seq-h1+bmp4-r2 H1
methylC-seq-h1-mesendoderm-r1 H1
methylC-seq-h1-mesendoderm-r2 H1
methylC-seq-h1-msc-r1 H1
methylC-seq-h1-msc-r2 H1
methylC-seq-h1-npc-r1 H1
methylC-seq-h1-npc-r2 H1
methylC-seq-h1-r1 H1
methylC-seq-h1-r2 H1
STL001GA-01 Gastric
STL003GA-01 Gastric
STL001FT-01 Fat cell
STL002FT-01 Fat cell
STL003FT-01 Fat cell
STL002EG-01 Esophagus
STL003EG-01 Esophagus
N37-Colon Colon
STL001SG-01 Colon
STL003SG-01 Colon
N37-CRBL Brain
N37-FL Brain
STL001BL-01 Bladder

File:GSI.22.tissues.png File:Code.20190903.TSI.22.tissues.R.txt