Daniel:Notebook/Haplotyping/BAC-HiC

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Revision as of 21:29, 9 December 2015 by >Djacobse (→‎Processing BAC and Hi-C Data)
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Processing BAC and Hi-C Data[edit]

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This page describes the data processing for the BAC-HiC combined data in the haplotyping project. For data locations, visit the Data Map.

Processing[edit]

  1. The data starts as the uncombined hair files
    1. Merge script for combining
    2. Hi-C Data Processing and BAC Data Processing
  2. Next, run hapcut in the log likelihood format
    1. HAPCUT script