Daniel:Notebook/Haplotyping/LFR-HiC

From ZhangLabWiki
Revision as of 21:31, 9 December 2015 by >Djacobse (Created page with "=Processing LFR and Hi-C Data= Back to Notebook This page describes the data processing for the LFR-HiC combined data in the haplotyping proj...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Processing LFR and Hi-C Data

Back to Notebook

This page describes the data processing for the LFR-HiC combined data in the haplotyping project. For data locations, visit the Data Map.

Processing

  1. The data starts as the uncombined hair files
    1. Merge script for combining
    2. Hi-C Data Processing and BAC Data Processing
  2. Next, run hapcut in the log likelihood format
    1. Llhapcut.lfrhic.sh