Qsub hapinfo2mhb.job

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Revision as of 07:22, 7 March 2016 by >Shicheng (Created page with " #!/bin/csh #PBS -N hapinfo2mhb #PBS -q hotel #PBS -l nodes=1:ppn=1 #PBS -l walltime=7:00:00 #PBS -o hapinfo2mhb.log #PBS -e hapinfo2mhb.err #PBS -V #PBS -M shihcheng...")
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#!/bin/csh
#PBS -N hapinfo2mhb
#PBS -q hotel
#PBS -l nodes=1:ppn=1
#PBS -l walltime=7:00:00
#PBS -o hapinfo2mhb.log
#PBS -e hapinfo2mhb.err
#PBS -V
#PBS -M shihcheng.guo@gmail.com
#PBS -m abe
#PBS -A k4zhang-group
cd /home/shg047/oasis/monod/hapinfo/WGBS
cat *hapInfo.txt >> HapinfoMerge.txt
perl ~/bin/hapinfo2mhb.pl HapinfoMerge.txt 0.3 > MONOD.R0.3.methyblock.bed
perl ~/bin/hapinfo2mhb.pl HapinfoMerge.txt 0.4 > MONOD.R0.4.methyblock.bed
perl ~/bin/hapinfo2mhb.pl HapinfoMerge.txt 0.5 > MONOD.R0.5.methyblock.bed
perl ~/bin/hapinfo2mhb.pl HapinfoMerge.txt 0.6 > MONOD.R0.6.methyblock.bed
perl ~/bin/hapinfo2mhb.pl HapinfoMerge.txt 0.7 > MONOD.R0.7.methyblock.bed