Our own data alignment and analysis
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fastq merge by indx
for i in {01,02,04,05,06,07,09,10,11,12} do cat s_*_1_Indx$i.txt.gz > Indx$i.read1.fq.gz & cat s_*_2_Indx$i.txt.gz > Indx$i.read2.fq.gz & done
- [[RD>90 and Len>80bp Regions]]