Alice:LabNotes/2008-1-11
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Experiment 1:Preparation of padlock library[edit]
- Real time PCR setup:
' | X16 | |||||
2X Taq master mix | 50 uL | 800uL | ||||
100 uM forward primer | 0.5uL | 8uL | ||||
100 uM reverse primer | 0.5uL | 8uL | ||||
SYBR Green (50x) | 0.5uL | 8uL | ||||
dH2O | 48.2 | 768 | ||||
Template (10uM) | 0.2 uL | 3.2uL | ||||
Total | 100uL | 1600uL |
94C 2min 20x (94C 30 sec, 58C 2 min, 72C 1 min)
72C 5 min incubate at 15C forever Note: the PCR is usually stopped 3 cycles after the curve goes to plateau.
Agrose gel result (1-12-08): File:ZhangLab 2 2008-01-12 15hr 00min.jpeg The bright bands on the bottom are the ladders for both columns (3uL ladder, 1 uL TBE buffer, and 1 uL of loading dye), and the rest of the wells contains sample 1-16 (4uL sample and 1uL of loading dye).
The bands on the left column (first 8 samples) don't good intensity, which is possibly caused by not well-mixed PCR reagents in the tube.