Andrew:Notebook/AR150618 C1

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31 nL MDA on C1 with GM12878[edit]

Overview[edit]

Motivation[edit]

File:AR150618 motivation.png

Reagents[edit]

File:AR150618 reagents.jpg

Protocol[edit]

File:Protocol Worksheet AR150618 C1 v1-1.png

File:Protocol Worksheet AR150618 C1 v1-2.png

File:Protocol Worksheet AR150618 C1 v1-3.png

File:AR150618 thermalProfile.png

Results[edit]

Cell capture[edit]

Initials Date (YYMMDD) Chamber Well i7 i5 i7 sequence (RC) i5 barcode SampleID Full barcode Number LiveOrDead Notes
AR 150618 Ch03 A01 N701 S502 TAAGGCGA CTCTCTAT AR-150618-Ch03-A01-N701-S502 TAAGGCGA-CTCTCTAT 0 na na
AR 150618 Ch02 A02 N702 S502 CGTACTAG CTCTCTAT AR-150618-Ch02-A02-N702-S502 CGTACTAG-CTCTCTAT 0 na na
AR 150618 Ch01 A03 N703 S502 AGGCAGAA CTCTCTAT AR-150618-Ch01-A03-N703-S502 AGGCAGAA-CTCTCTAT 0 na na
AR 150618 Ch49 A04 N704 S502 TCCTGAGC CTCTCTAT AR-150618-Ch49-A04-N704-S502 TCCTGAGC-CTCTCTAT 0 na na
AR 150618 Ch50 A05 N705 S502 GGACTCCT CTCTCTAT AR-150618-Ch50-A05-N705-S502 GGACTCCT-CTCTCTAT 0 na na
AR 150618 Ch51 A06 N706 S502 TAGGCATG CTCTCTAT AR-150618-Ch51-A06-N706-S502 TAGGCATG-CTCTCTAT 0 na na
AR 150618 Ch06 A07 N707 S502 CTCTCTAC CTCTCTAT AR-150618-Ch06-A07-N707-S502 CTCTCTAC-CTCTCTAT 0 na na
AR 150618 Ch05 A08 N710 S502 CGAGGCTG CTCTCTAT AR-150618-Ch05-A08-N710-S502 CGAGGCTG-CTCTCTAT 0 na na
AR 150618 Ch04 A09 N711 S502 AAGAGGCA CTCTCTAT AR-150618-Ch04-A09-N711-S502 AAGAGGCA-CTCTCTAT 0 na na
AR 150618 Ch52 A10 N712 S502 GTAGAGGA CTCTCTAT AR-150618-Ch52-A10-N712-S502 GTAGAGGA-CTCTCTAT 0 na na
AR 150618 Ch53 A11 N714 S502 GCTCATGA CTCTCTAT AR-150618-Ch53-A11-N714-S502 GCTCATGA-CTCTCTAT 0 na na
AR 150618 Ch54 A12 N715 S502 ATCTCAGG CTCTCTAT AR-150618-Ch54-A12-N715-S502 ATCTCAGG-CTCTCTAT 0 na na
AR 150618 Ch09 B01 N701 S503 TAAGGCGA TATCCTCT AR-150618-Ch09-B01-N701-S503 TAAGGCGA-TATCCTCT 0 na na
AR 150618 Ch08 B02 N702 S503 CGTACTAG TATCCTCT AR-150618-Ch08-B02-N702-S503 CGTACTAG-TATCCTCT 0 na na
AR 150618 Ch07 B03 N703 S503 AGGCAGAA TATCCTCT AR-150618-Ch07-B03-N703-S503 AGGCAGAA-TATCCTCT 1 dead na
AR 150618 Ch55 B04 N704 S503 TCCTGAGC TATCCTCT AR-150618-Ch55-B04-N704-S503 TCCTGAGC-TATCCTCT 0 na na
AR 150618 Ch56 B05 N705 S503 GGACTCCT TATCCTCT AR-150618-Ch56-B05-N705-S503 GGACTCCT-TATCCTCT 0 na na
AR 150618 Ch57 B06 N706 S503 TAGGCATG TATCCTCT AR-150618-Ch57-B06-N706-S503 TAGGCATG-TATCCTCT 0 na na
AR 150618 Ch12 B07 N707 S503 CTCTCTAC TATCCTCT AR-150618-Ch12-B07-N707-S503 CTCTCTAC-TATCCTCT 1 dead na
AR 150618 Ch11 B08 N710 S503 CGAGGCTG TATCCTCT AR-150618-Ch11-B08-N710-S503 CGAGGCTG-TATCCTCT 3 dead na
AR 150618 Ch10 B09 N711 S503 AAGAGGCA TATCCTCT AR-150618-Ch10-B09-N711-S503 AAGAGGCA-TATCCTCT 1 dead weak
AR 150618 Ch58 B10 N712 S503 GTAGAGGA TATCCTCT AR-150618-Ch58-B10-N712-S503 GTAGAGGA-TATCCTCT 0 na na
AR 150618 Ch59 B11 N714 S503 GCTCATGA TATCCTCT AR-150618-Ch59-B11-N714-S503 GCTCATGA-TATCCTCT 0 na na
AR 150618 Ch60 B12 N715 S503 ATCTCAGG TATCCTCT AR-150618-Ch60-B12-N715-S503 ATCTCAGG-TATCCTCT 0 na na
AR 150618 Ch15 C01 N701 S505 TAAGGCGA GTAAGGAG AR-150618-Ch15-C01-N701-S505 TAAGGCGA-GTAAGGAG 2 dead na
AR 150618 Ch14 C02 N702 S505 CGTACTAG GTAAGGAG AR-150618-Ch14-C02-N702-S505 CGTACTAG-GTAAGGAG 1 dead lumpy
AR 150618 Ch13 C03 N703 S505 AGGCAGAA GTAAGGAG AR-150618-Ch13-C03-N703-S505 AGGCAGAA-GTAAGGAG 1 live extravasating
AR 150618 Ch61 C04 N704 S505 TCCTGAGC GTAAGGAG AR-150618-Ch61-C04-N704-S505 TCCTGAGC-GTAAGGAG 1 dead weak
AR 150618 Ch62 C05 N705 S505 GGACTCCT GTAAGGAG AR-150618-Ch62-C05-N705-S505 GGACTCCT-GTAAGGAG 0 na na
AR 150618 Ch63 C06 N706 S505 TAGGCATG GTAAGGAG AR-150618-Ch63-C06-N706-S505 TAGGCATG-GTAAGGAG 0 na na
AR 150618 Ch18 C07 N707 S505 CTCTCTAC GTAAGGAG AR-150618-Ch18-C07-N707-S505 CTCTCTAC-GTAAGGAG 1 both extravasating
AR 150618 Ch17 C08 N710 S505 CGAGGCTG GTAAGGAG AR-150618-Ch17-C08-N710-S505 CGAGGCTG-GTAAGGAG 1 live extravasating
AR 150618 Ch16 C09 N711 S505 AAGAGGCA GTAAGGAG AR-150618-Ch16-C09-N711-S505 AAGAGGCA-GTAAGGAG 1 both na
AR 150618 Ch64 C10 N712 S505 GTAGAGGA GTAAGGAG AR-150618-Ch64-C10-N712-S505 GTAGAGGA-GTAAGGAG 0 na na
AR 150618 Ch65 C11 N714 S505 GCTCATGA GTAAGGAG AR-150618-Ch65-C11-N714-S505 GCTCATGA-GTAAGGAG 0 na na
AR 150618 Ch66 C12 N715 S505 ATCTCAGG GTAAGGAG AR-150618-Ch66-C12-N715-S505 ATCTCAGG-GTAAGGAG 0 na na
AR 150618 Ch21 D01 N701 S506 TAAGGCGA ACTGCATA AR-150618-Ch21-D01-N701-S506 TAAGGCGA-ACTGCATA 1 live extravasating
AR 150618 Ch20 D02 N702 S506 CGTACTAG ACTGCATA AR-150618-Ch20-D02-N702-S506 CGTACTAG-ACTGCATA 1 dead na
AR 150618 Ch19 D03 N703 S506 AGGCAGAA ACTGCATA AR-150618-Ch19-D03-N703-S506 AGGCAGAA-ACTGCATA 0 na na
AR 150618 Ch67 D04 N704 S506 TCCTGAGC ACTGCATA AR-150618-Ch67-D04-N704-S506 TCCTGAGC-ACTGCATA 0 na na
AR 150618 Ch68 D05 N705 S506 GGACTCCT ACTGCATA AR-150618-Ch68-D05-N705-S506 GGACTCCT-ACTGCATA 0 na na
AR 150618 Ch69 D06 N706 S506 TAGGCATG ACTGCATA AR-150618-Ch69-D06-N706-S506 TAGGCATG-ACTGCATA 0 na na
AR 150618 Ch24 D07 N707 S506 CTCTCTAC ACTGCATA AR-150618-Ch24-D07-N707-S506 CTCTCTAC-ACTGCATA 1 dead extravasating
AR 150618 Ch23 D08 N710 S506 CGAGGCTG ACTGCATA AR-150618-Ch23-D08-N710-S506 CGAGGCTG-ACTGCATA 1 dead na
AR 150618 Ch22 D09 N711 S506 AAGAGGCA ACTGCATA AR-150618-Ch22-D09-N711-S506 AAGAGGCA-ACTGCATA 1 live extravasating
AR 150618 Ch70 D10 N712 S506 GTAGAGGA ACTGCATA AR-150618-Ch70-D10-N712-S506 GTAGAGGA-ACTGCATA 1 dead extravasating
AR 150618 Ch71 D11 N714 S506 GCTCATGA ACTGCATA AR-150618-Ch71-D11-N714-S506 GCTCATGA-ACTGCATA 0 na na
AR 150618 Ch72 D12 N715 S506 ATCTCAGG ACTGCATA AR-150618-Ch72-D12-N715-S506 ATCTCAGG-ACTGCATA 0 na na
AR 150618 Ch25 E01 N701 S507 TAAGGCGA AAGGAGTA AR-150618-Ch25-E01-N701-S507 TAAGGCGA-AAGGAGTA 1 live weak
AR 150618 Ch26 E02 N702 S507 CGTACTAG AAGGAGTA AR-150618-Ch26-E02-N702-S507 CGTACTAG-AAGGAGTA 0 na na
AR 150618 Ch27 E03 N703 S507 AGGCAGAA AAGGAGTA AR-150618-Ch27-E03-N703-S507 AGGCAGAA-AAGGAGTA 0 na na
AR 150618 Ch75 E04 N704 S507 TCCTGAGC AAGGAGTA AR-150618-Ch75-E04-N704-S507 TCCTGAGC-AAGGAGTA 0 na na
AR 150618 Ch74 E05 N705 S507 GGACTCCT AAGGAGTA AR-150618-Ch74-E05-N705-S507 GGACTCCT-AAGGAGTA 1 live extravasating
AR 150618 Ch73 E06 N706 S507 TAGGCATG AAGGAGTA AR-150618-Ch73-E06-N706-S507 TAGGCATG-AAGGAGTA 0 na na
AR 150618 Ch28 E07 N707 S507 CTCTCTAC AAGGAGTA AR-150618-Ch28-E07-N707-S507 CTCTCTAC-AAGGAGTA 1 live weak
AR 150618 Ch29 E08 N710 S507 CGAGGCTG AAGGAGTA AR-150618-Ch29-E08-N710-S507 CGAGGCTG-AAGGAGTA 1 live extravasating
AR 150618 Ch30 E09 N711 S507 AAGAGGCA AAGGAGTA AR-150618-Ch30-E09-N711-S507 AAGAGGCA-AAGGAGTA 1 live weak
AR 150618 Ch78 E10 N712 S507 GTAGAGGA AAGGAGTA AR-150618-Ch78-E10-N712-S507 GTAGAGGA-AAGGAGTA 0 na na
AR 150618 Ch77 E11 N714 S507 GCTCATGA AAGGAGTA AR-150618-Ch77-E11-N714-S507 GCTCATGA-AAGGAGTA 1 dead weak
AR 150618 Ch76 E12 N715 S507 ATCTCAGG AAGGAGTA AR-150618-Ch76-E12-N715-S507 ATCTCAGG-AAGGAGTA 0 na na
AR 150618 Ch31 F01 N701 S508 TAAGGCGA CTAAGCCT AR-150618-Ch31-F01-N701-S508 TAAGGCGA-CTAAGCCT 2 dead na
AR 150618 Ch32 F02 N702 S508 CGTACTAG CTAAGCCT AR-150618-Ch32-F02-N702-S508 CGTACTAG-CTAAGCCT 0 na na
AR 150618 Ch33 F03 N703 S508 AGGCAGAA CTAAGCCT AR-150618-Ch33-F03-N703-S508 AGGCAGAA-CTAAGCCT 1 dead na
AR 150618 Ch81 F04 N704 S508 TCCTGAGC CTAAGCCT AR-150618-Ch81-F04-N704-S508 TCCTGAGC-CTAAGCCT 0 na na
AR 150618 Ch80 F05 N705 S508 GGACTCCT CTAAGCCT AR-150618-Ch80-F05-N705-S508 GGACTCCT-CTAAGCCT 1 dead na
AR 150618 Ch79 F06 N706 S508 TAGGCATG CTAAGCCT AR-150618-Ch79-F06-N706-S508 TAGGCATG-CTAAGCCT 1 dead extravasating
AR 150618 Ch34 F07 N707 S508 CTCTCTAC CTAAGCCT AR-150618-Ch34-F07-N707-S508 CTCTCTAC-CTAAGCCT 1 live weak
AR 150618 Ch35 F08 N710 S508 CGAGGCTG CTAAGCCT AR-150618-Ch35-F08-N710-S508 CGAGGCTG-CTAAGCCT 2 live na
AR 150618 Ch36 F09 N711 S508 AAGAGGCA CTAAGCCT AR-150618-Ch36-F09-N711-S508 AAGAGGCA-CTAAGCCT 0 na na
AR 150618 Ch84 F10 N712 S508 GTAGAGGA CTAAGCCT AR-150618-Ch84-F10-N712-S508 GTAGAGGA-CTAAGCCT 0 na na
AR 150618 Ch83 F11 N714 S508 GCTCATGA CTAAGCCT AR-150618-Ch83-F11-N714-S508 GCTCATGA-CTAAGCCT 0 na na
AR 150618 Ch82 F12 N715 S508 ATCTCAGG CTAAGCCT AR-150618-Ch82-F12-N715-S508 ATCTCAGG-CTAAGCCT 1 live extravasating
AR 150618 Ch37 G01 N701 S510 TAAGGCGA CGTCTAAT AR-150618-Ch37-G01-N701-S510 TAAGGCGA-CGTCTAAT 0 na na
AR 150618 Ch38 G02 N702 S510 CGTACTAG CGTCTAAT AR-150618-Ch38-G02-N702-S510 CGTACTAG-CGTCTAAT 0 dead na
AR 150618 Ch39 G03 N703 S510 AGGCAGAA CGTCTAAT AR-150618-Ch39-G03-N703-S510 AGGCAGAA-CGTCTAAT 1 live na
AR 150618 Ch87 G04 N704 S510 TCCTGAGC CGTCTAAT AR-150618-Ch87-G04-N704-S510 TCCTGAGC-CGTCTAAT 0 na na
AR 150618 Ch86 G05 N705 S510 GGACTCCT CGTCTAAT AR-150618-Ch86-G05-N705-S510 GGACTCCT-CGTCTAAT 1 dead na
AR 150618 Ch85 G06 N706 S510 TAGGCATG CGTCTAAT AR-150618-Ch85-G06-N706-S510 TAGGCATG-CGTCTAAT 0 na na
AR 150618 Ch40 G07 N707 S510 CTCTCTAC CGTCTAAT AR-150618-Ch40-G07-N707-S510 CTCTCTAC-CGTCTAAT 3 dead na
AR 150618 Ch41 G08 N710 S510 CGAGGCTG CGTCTAAT AR-150618-Ch41-G08-N710-S510 CGAGGCTG-CGTCTAAT 1 dead na
AR 150618 Ch42 G09 N711 S510 AAGAGGCA CGTCTAAT AR-150618-Ch42-G09-N711-S510 AAGAGGCA-CGTCTAAT 1 dead extravasating
AR 150618 Ch90 G10 N712 S510 GTAGAGGA CGTCTAAT AR-150618-Ch90-G10-N712-S510 GTAGAGGA-CGTCTAAT 2 both na
AR 150618 Ch89 G11 N714 S510 GCTCATGA CGTCTAAT AR-150618-Ch89-G11-N714-S510 GCTCATGA-CGTCTAAT 1 both weak
AR 150618 Ch88 G12 N715 S510 ATCTCAGG CGTCTAAT AR-150618-Ch88-G12-N715-S510 ATCTCAGG-CGTCTAAT 1 dead na
AR 150618 Ch43 H01 N701 S511 TAAGGCGA TCTCTCCG AR-150618-Ch43-H01-N701-S511 TAAGGCGA-TCTCTCCG 1 dead extravasating
AR 150618 Ch44 H02 N702 S511 CGTACTAG TCTCTCCG AR-150618-Ch44-H02-N702-S511 CGTACTAG-TCTCTCCG 0 na debris
AR 150618 Ch45 H03 N703 S511 AGGCAGAA TCTCTCCG AR-150618-Ch45-H03-N703-S511 AGGCAGAA-TCTCTCCG 1 live extravasating
AR 150618 Ch93 H04 N704 S511 TCCTGAGC TCTCTCCG AR-150618-Ch93-H04-N704-S511 TCCTGAGC-TCTCTCCG 0 na na
AR 150618 Ch92 H05 N705 S511 GGACTCCT TCTCTCCG AR-150618-Ch92-H05-N705-S511 GGACTCCT-TCTCTCCG 1 live bright
AR 150618 Ch91 H06 N706 S511 TAGGCATG TCTCTCCG AR-150618-Ch91-H06-N706-S511 TAGGCATG-TCTCTCCG 0 both debris
AR 150618 Ch46 H07 N707 S511 CTCTCTAC TCTCTCCG AR-150618-Ch46-H07-N707-S511 CTCTCTAC-TCTCTCCG 1 dead na
AR 150618 Ch47 H08 N710 S511 CGAGGCTG TCTCTCCG AR-150618-Ch47-H08-N710-S511 CGAGGCTG-TCTCTCCG 1 both extravasating
AR 150618 Ch48 H09 N711 S511 AAGAGGCA TCTCTCCG AR-150618-Ch48-H09-N711-S511 AAGAGGCA-TCTCTCCG 0 na na
AR 150618 Ch96 H10 N712 S511 GTAGAGGA TCTCTCCG AR-150618-Ch96-H10-N712-S511 GTAGAGGA-TCTCTCCG 1 live extravasating
AR 150618 Ch95 H11 N714 S511 GCTCATGA TCTCTCCG AR-150618-Ch95-H11-N714-S511 GCTCATGA-TCTCTCCG 1 live extravasating
AR 150618 Ch94 H12 N715 S511 ATCTCAGG TCTCTCCG AR-150618-Ch94-H12-N715-S511 ATCTCAGG-TCTCTCCG 1 dead na

Nextera PCR[edit]

Ran Nextera PCR on Eppendorf qPCR machine

File:AR150618 NexteraPCR.png

Size selection[edit]

File:AR150618 C1 gels.png

Sequencing[edit]

Hasty Lab Miseq ' ' ' ' ' ' ' ' '
Kit Provider: Kun Zhang Lab
6/24/2015
Loading Concentration: 26.5 pM
Sample ID Index Sequence # of Reads Run Type, Minmum BP Library Size Gel Image Read 1 Sequencing Primer Index Primer Read 2 Sequencing Primer Notes
INITIAL-PROJECT-SAMPLE-DATE-Index CGTGCA Million SE/PE, 36+6+36 SIZE RANGE (BP) Link Name Name Name Labeling, pooling, quantification, etc
AR-150618-Ch03-A01-N701-S502 TAAGGCGA-CTCTCTAT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch02-A02-N702-S502 CGTACTAG-CTCTCTAT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch07-B03-N703-S503 AGGCAGAA-TATCCTCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch12-B07-N707-S503 CTCTCTAC-TATCCTCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch13-C03-N703-S505 AGGCAGAA-GTAAGGAG 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch17-C08-N710-S505 CGAGGCTG-GTAAGGAG 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch21-D01-N701-S506 TAAGGCGA-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch20-D02-N702-S506 CGTACTAG-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch24-D07-N707-S506 CTCTCTAC-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch23-D08-N710-S506 CGAGGCTG-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch22-D09-N711-S506 AAGAGGCA-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch70-D10-N712-S506 GTAGAGGA-ACTGCATA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch74-E05-N705-S507 GGACTCCT-AAGGAGTA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch29-E08-N710-S507 CGAGGCTG-AAGGAGTA 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch33-F03-N703-S508 AGGCAGAA-CTAAGCCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch80-F05-N705-S508 GGACTCCT-CTAAGCCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch79-F06-N706-S508 TAGGCATG-CTAAGCCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch82-F12-N715-S508 ATCTCAGG-CTAAGCCT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch39-G03-N703-S510 AGGCAGAA-CGTCTAAT 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18
AR-150618-Ch45-H03-N703-S511 AGGCAGAA-TCTCTCCG 1 SE50+8+8 250-800 http://genome-tech.ucsd.edu/LabNotes/index.php/File:AR150618_C1_gels.png HP10 HP12 NA Tube labeled AR 6/18

Screening[edit]

File:AR150618 libraryComplexities.jpg


CNV profiling[edit]

File:AR-150618-Ch02-A02-N702-S502.all.png File:AR-150618-Ch03-A01-N701-S502.all.png File:AR-150618-Ch07-B03-N703-S503.all.png File:AR-150618-Ch12-B07-N707-S503.all.png File:AR-150618-Ch13-C03-N703-S505.all.png File:AR-150618-Ch17-C08-N710-S505.all.png File:AR-150618-Ch20-D02-N702-S506.all.png File:AR-150618-Ch21-D01-N701-S506.all.png File:AR-150618-Ch22-D09-N711-S506.all.png File:AR-150618-Ch23-D08-N710-S506.all.png File:AR-150618-Ch24-D07-N707-S506.all.png File:AR-150618-Ch29-E08-N710-S507.all.png File:AR-150618-Ch33-F03-N703-S508.all.png File:AR-150618-Ch39-G03-N703-S510.all.png File:AR-150618-Ch45-H03-N703-S511.all.png File:AR-150618-Ch70-D10-N712-S506.all.png File:AR-150618-Ch74-E05-N705-S507.all.png File:AR-150618-Ch79-F06-N706-S508.all.png File:AR-150618-Ch80-F05-N705-S508.all.png File:AR-150618-Ch82-F12-N715-S508.all.png

Lorenz Curves[edit]

File:AR-150618-Ch02-A02-N702-S502 lorenz.png File:AR-150618-Ch03-A01-N701-S502 lorenz.png File:AR-150618-Ch07-B03-N703-S503 lorenz.png File:AR-150618-Ch12-B07-N707-S503 lorenz.png File:AR-150618-Ch13-C03-N703-S505 lorenz.png File:AR-150618-Ch17-C08-N710-S505 lorenz.png File:AR-150618-Ch20-D02-N702-S506 lorenz.png File:AR-150618-Ch21-D01-N701-S506 lorenz.png File:AR-150618-Ch22-D09-N711-S506 lorenz.png File:AR-150618-Ch23-D08-N710-S506 lorenz.png File:AR-150618-Ch24-D07-N707-S506 lorenz.png File:AR-150618-Ch29-E08-N710-S507 lorenz.png File:AR-150618-Ch33-F03-N703-S508 lorenz.png File:AR-150618-Ch39-G03-N703-S510 lorenz.png File:AR-150618-Ch45-H03-N703-S511 lorenz.png File:AR-150618-Ch70-D10-N712-S506 lorenz.png File:AR-150618-Ch74-E05-N705-S507 lorenz.png File:AR-150618-Ch79-F06-N706-S508 lorenz.png File:AR-150618-Ch80-F05-N705-S508 lorenz.png File:AR-150618-Ch82-F12-N715-S508 lorenz.png

Mouse pipeline[edit]

Column purified MEF gDNA was used as a cell-free control. It was run through an identical pipeline constructed for mm10 instead of hg38

File:AR150618 mouse libraryComplexities.jpg

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