Andrew:Notebook/AR150701 bulk

From ZhangLabWiki
Jump to navigation Jump to search

Motivation[edit]

Bulk library prep for PEO1 and PEO4 seemed to have failed (performed in parallel with 6/25 C1 libraries). We repeated it with Nextera XT

Results[edit]

Size selection[edit]

File:DT150701 bulk.png

Sequencing[edit]

Sequencing data stored in /media/LTS_33T/SeqStore2/150702_MiSeq

Screening[edit]

File:AR150701 libraryComplexities.jpg

CNV profiling[edit]

File:DT-150701-bulk-PEO1-N704-S502.jpg File:DT-150701-bulk-PEO4-N703-S517.jpg

Lorenz curves[edit]

File:DT-150701-bulk-PEO1-N704-S502 lorenz.jpg File:DT-150701-bulk-PEO4-N703-S517 lorenz.jpg