Athurva Gore/LabNotes/2009-9-21
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[edit]
TO DO[edit]
- Email Sanjay Nigam - kidney methylation studies
- End-to-End Mapping with Trimming; test this approach.
- Hemophilia - Read over CEGS proposal
Exome Resequencing[edit]
IPS and Cancer[edit]
- Check new DF699 and Foreskin Fibroblast Data
AL001 Set[edit]
- Very few reads present; not able to draw anything from this.
AL002 Set[edit]
- New set, contains Foreskin-DF699 pair and CraigVenter-IPS pair
- Need to run analysis; do we need to trim?
- Check this.
- Currently running on genome-miner:/media/TmpStore2 (TmpStore1 is low on space, need to delete some of the old not-working analysis)
PGP Data[edit]
- Analyze merged PGP4, 6, and 10 data - need to postprocess
- Phylogenetic Tree clustering of PGP and Shendure samples
Probe Design[edit]
- Baylor Probe Set is currently running on genome-tech.
- Jay Lee Probeset
- dbSNP Probes are done
- Need to run separate job on cDNA targets
- Make sure conversion script still works...check if we can add the same values?