Athurva Gore/LabNotes/2009-9-21

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Navigation[edit]

TO DO[edit]

  • Email Sanjay Nigam - kidney methylation studies
  • End-to-End Mapping with Trimming; test this approach.
  • Hemophilia - Read over CEGS proposal


Exome Resequencing[edit]

IPS and Cancer[edit]

  • Check new DF699 and Foreskin Fibroblast Data

AL001 Set[edit]

  • Very few reads present; not able to draw anything from this.

AL002 Set[edit]

  • New set, contains Foreskin-DF699 pair and CraigVenter-IPS pair
  • Need to run analysis; do we need to trim?
    • Check this.
  • Currently running on genome-miner:/media/TmpStore2 (TmpStore1 is low on space, need to delete some of the old not-working analysis)

PGP Data[edit]

  • Analyze merged PGP4, 6, and 10 data - need to postprocess
  • Phylogenetic Tree clustering of PGP and Shendure samples

Probe Design[edit]

  • Baylor Probe Set is currently running on genome-tech.
  • Jay Lee Probeset
    • dbSNP Probes are done
    • Need to run separate job on cDNA targets
    • Make sure conversion script still works...check if we can add the same values?