Athurva Gore/LabNotes/2009-9-23
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[edit]
Presentation[edit]
- September 23 Lab Meeting:
- http://docs.google.com/present/edit?id=0AZnKSQ9Jqu6_ZDVqcWd6cF85OGRmaHdiaGdu&hl=en
Probe Generation[edit]
- Baylor CaptureProbe set is done.
- Uploaded to Wiki at: [[1]]
- Email Dr. Zhang so he can order probes.
Exome Project[edit]
- Need to check coverage with combined reads.
- On genome-miner, combining reads into one file. Then run mapping. What regions do we cover? Extract ranges from pileup file, see what Exons we miss consistently.
- Get average coverage for each exon?
- Do we get any regions with very low coverage? These will need to be redone.