Athurva Gore/LabNotes/2010-1-7
Jump to navigation
Jump to search
PGP[edit]
- If we only use data from October or newer, we have the following data sets:
- HL013
- HL024
- HL025
- HL029
- HL019
- HL014
- HL028
- HL015
- HL027
- HL030
- AL006
- Need to find the mapping rate for each one; can guess its usefulness in the data set this way.
- Should we incorporate older reads?
- Map one lane from each flowcell to get a general idea of mapping rate.
- Fill in the below table:
Flowcell | Lane | Number of Reads | Mapped Reads | Mapped Downsampled Reads |
HL013 | 1 | 59491092 | ||
HL014 | 6 | 47862784 | ||
HL015 | 1 | 53717748 | ||
HL019 | 4 | 59623024 | ||
HL024 | 1 | 64242556 | ||
HL025 | 1 | 36424692 | ||
HL027 | 8 | 47824792 | ||
HL028 | 6 | 37242492 | ||
HL029 | 1 | 33484628 | ||
HL030 | 1 | 58820868 | ||
AL006 | 5 | 57942248 |
iPS and Cancer[edit]
- Waiting to hear back from Science
- First advisor didn't really seem to read paper
- If no response, try with Nature
- Rewriting as Letter to Nature
- Guidelines: LINK
- ~200 word introductory paragraph, ~1500 word text, ~300 word methods summary, ~1000 word methods, and supplementary info
- Mostly done with rewrite; need to go over text of paper and edit the additions made