Athurva Gore/LabNotes/2011-10-5
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TO DO[edit]
- Free space on Genome-Miner, create Shared Folder for HiSeq - DONE
- Monitor run; if necessary, free up more disk space
- Nature Methods Manuscript
- Barcoding Padlock Probe libraries - Need to meet with Dinh and Noi
- Goldstein Lab Samples
- Did not end up having time to do PCR today; run reactions tomorrow morning
- Can get results by Friday instead of tomorrow
- Cell Culture
- Tonight, look at schedule for CERC tomorrow
- Need to finish EB work tomorrow; email Christine or Carl about this
- Low-input Bisulfite Conversion
- Paper with Sergio (see notes from August 22nd)
- Obtained mRNA sequences for other HUV and AST iPS mutated genes
- Need to design primers that work on cDNA for these samples
- Low-input Exomes (Athanasia)
- Papers for Doug - ask Dr. Zhang?
Nature Methods Manuscript[edit]
Meeting with Dinh and Noi[edit]
- See google document here: [[1]]
- Came up with list of Action items
- My responsibilities:
- Disclose Probe Design Algorithm - Athurva
- Write paragraph on algorithm
- Mention adaptability of algorithm to different organisms and target regions
- Generate figure describing algorithm
- Package software for distribution
- Include a manual on how to use the software
- Edit Main Text
- Help with barcoding experiments
- Disclose Probe Design Algorithm - Athurva