Chris:LabNotes/Microbiome/2011/2011-1-31

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MG-RAST Results[edit]

Background[edit]

  • Sent in sample from 101123_HL083_NP-SAG-MouseGutSetB-Nov4_ID1 for a test

Procedure[edit]

  • Performed assembly using ABySS on raw reads from Batch B (no trimming)
    • kmer=27
  • Did not do any trimming of reads or of assembly contig file

Results[edit]

  • See MG-RAST website
  • Sam already did March02 dataset -> so I will just continue using MG-RAST on batch A and B