Daniel:Notebook/ComboLock/ExperimentList

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Experiment List[edit]

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This page is a list of experiments performed in ComboLock and the corresponding dates to those experiments

2017[edit]

July 2017[edit]

  1. Protein/Oligo Mixture (7/6/2017)
  2. <dynamicpagelist> category=ComboLock category=20170706 </dynamicpagelist>
  3. Multiplex Experiment (7/13/2017)
  4. <dynamicpagelist> category=ComboLock category=20170713 </dynamicpagelist>

June 2017[edit]

  1. Sensitivity and Specificity Experiments (6/5/2017)
  2. <dynamicpagelist> category=ComboLock category=20170605 </dynamicpagelist>
  3. Antibody Testing (6/14/2017)
  4. <dynamicpagelist> category=ComboLock category=20170614 </dynamicpagelist>

May 2017[edit]

  1. BSA Antibody production (5/13/2017)
  2. <dynamicpagelist> category=ComboLock category=20170513 </dynamicpagelist>

April 2017[edit]

  1. RCA Test-2 primers "Double Deuce or DD" (4/11/2017)
  2. <dynamicpagelist> category=ComboLock category=20170411 </dynamicpagelist>
  3. Production Run-Test final parameters and such; full protocol (4/28/2017)
  4. <dynamicpagelist> category=ComboLock category=20170428 </dynamicpagelist>

March 2017[edit]

  1. Version 3 Oligos-Padlock0601 Test (3/1/2017)
  2. <dynamicpagelist> category=ComboLock category=20170301 </dynamicpagelist>
  3. Bolt Test-Ligation reaction connecting the C probes for a padlock binding target (3/8/2017)
  4. <dynamicpagelist> category=ComboLock category=20170308 </dynamicpagelist>
  5. T4Poly-Testing Circularization methods including t4 polymerase/ligase and hot-starting phusion (3/15/2017)
  6. <dynamicpagelist> category=ComboLock category=20170315 </dynamicpagelist>
  7. Creating a Circular/Linear Product for Positive/Negative RCA Controls (3/22/2017)
  8. <dynamicpagelist> category=ComboLock category=20170322 </dynamicpagelist>
  9. RCA Test on Circular and Linear Controls (3/26/2017)
  10. <dynamicpagelist> category=ComboLock category=20170324 </dynamicpagelist>

February 2017[edit]

  1. Version 2 Oligos Test 2 (2/2/2017)
  2. <dynamicpagelist> category=ComboLock category=20170202 </dynamicpagelist>
  3. Version 3 Oligos-Low Temps (2/7/2017)
  4. <dynamicpagelist> category=ComboLock category=20170207 </dynamicpagelist>
  5. Beads Binding Test (2/9/2017)-Tests the efficiency of binding for the biotin-template to the beads and especially the C probes to the template. Also focuses on the temperature-dependent efficiency of wash/incubation steps
  6. <dynamicpagelist> category=ComboLock category=20170209 </dynamicpagelist>

January 2017[edit]

  1. Version 2 Oligos - Short Oligonucleotides (1/9/2017)
  2. <dynamicpagelist> category=ComboLock category=20170106 </dynamicpagelist>
  3. Version 3 Oligos - Normal Length Adapters, Lock Oligos, Phosphates Attached (1/13/2017)
  4. <dynamicpagelist> category=ComboLock category=20170113 </dynamicpagelist>
  5. RCA Test Dilutions - (1/23/2017) - Uses C4-C2 amplicon and Padlock0501 to test circularization and RCA effects
  6. <dynamicpagelist> category=ComboLock category=20170123 </dynamicpagelist>
  7. RCA Time Test - (1/27/2017) - Testing Various RCA conditions incl time
  8. <dynamicpagelist> category=ComboLock category=20170127 </dynamicpagelist>

2016[edit]

December 2016[edit]

  1. Mirror C Probe - Overnight capture (12/15/2016)
  2. <dynamicpagelist> category=ComboLock category=20161215 </dynamicpagelist>
  3. Mirror C Probe Test (12/13/2016)
  4. <dynamicpagelist> category=ComboLock category=20161213 </dynamicpagelist>

November 2016[edit]

  1. Antibody Binding Positive Control Test (11/03/2016)
  2. <dynamicpagelist> category=ComboLock category=20161103 </dynamicpagelist>
  3. Cell Test with RCA (11/07/2016)
  4. <dynamicpagelist> category=ComboLock category=20161107 </dynamicpagelist>
  5. Antibody Binding Positive Control Test 2 (11/15/2016)
  6. <dynamicpagelist> category=ComboLock category=20161115 </dynamicpagelist>
  7. Circularization Test 2 (11/22/2016)
  8. <dynamicpagelist> category=ComboLock category=20161122 </dynamicpagelist>
  9. Extended Latch Test (11/29/2016)
  10. <dynamicpagelist> category=ComboLock category=20161129 </dynamicpagelist>

October 2016[edit]

  1. C-Probe Positive Control Test (10/05/2016)
  2. <dynamicpagelist> category=ComboLock category=20161005 </dynamicpagelist>
  3. Padlock0301 Test (C-Probe Positive Control Template; 10/07/2016)
  4. <dynamicpagelist> category=ComboLock category=20161007 </dynamicpagelist>
  5. Padlock0301 Dilutions Test (10/13/2016)
  6. <dynamicpagelist> category=ComboLock category=20161013 </dynamicpagelist>
  7. BSA Ab-Oligo Linkage (10/14/2016)
  8. <dynamicpagelist> category=ComboLock category=20161014 </dynamicpagelist>
  9. Cell Test with Padlock0201 (10/17/2016)
  10. <dynamicpagelist> category=ComboLock category=20161017 </dynamicpagelist>
  11. Cell Test 2 (10/18/2016)
  12. <dynamicpagelist> category=ComboLock category=20161018 </dynamicpagelist>
  13. Cell Test 3-Time Course Experiment (10/21/2016)
  14. <dynamicpagelist> category=ComboLock category=20161021 </dynamicpagelist>
  15. Beads UMI Test (10/27/2016)
  16. <dynamicpagelist> category=ComboLock category=20161027 </dynamicpagelist>
  17. Circularization Test (10/31/2016)
  18. <dynamicpagelist> category=ComboLock category=20161031 </dynamicpagelist>

September 2016[edit]

  1. Positive Control Amplicon PCR Test, Primer Concentration (09/22/2016)
  2. <dynamicpagelist> category=ComboLock category=20160922 </dynamicpagelist>
  3. PCAmp4 Production (09/28/2016)
  4. <dynamicpagelist> category=ComboLock category=20160928 </dynamicpagelist>
  5. PC amplification test using (P12RC/P2) amplification primers(09/29/2016)
  6. <dynamicpagelist> category=ComboLock category=20160929 </dynamicpagelist>
  7. Padlock0201 test including primer amplification (Adapter is now primer24 sequence; 09/30/2016)
  8. <dynamicpagelist> category=ComboLock category=20160930 </dynamicpagelist>

August 2016[edit]

  1. Positive Control Amplicon Production (08/05/2016)
  2. <dynamicpagelist> category=ComboLock category=20160805 </dynamicpagelist>
  3. Positive Control Amplicon Test (08/18/2016)
  4. <dynamicpagelist> category=ComboLock category=20160818 </dynamicpagelist>
  5. Positive Control Amplicon Production 2 (08/23/2016)
  6. <dynamicpagelist> category=ComboLock category=20160823 </dynamicpagelist>
  7. Positive Control Amplicon Test 2 (08/22/2016)
  8. <dynamicpagelist> category=ComboLock category=20160822 </dynamicpagelist>
  9. Positive Control Dilution-X2(08/26/2016)
  10. <dynamicpagelist> category=ComboLock category=20160826 </dynamicpagelist>
  11. Positive Control-X3 (08/29/2016)
  12. <dynamicpagelist> category=ComboLock category=20160829 </dynamicpagelist>

July 2016[edit]

  1. C Probe SOD1/VIM Test 2 (7-1-2016)
  2. <dynamicpagelist> category=ComboLock category=20160701 </dynamicpagelist>
  3. Sequential Hybridization Test (7-5-2016)
  4. <dynamicpagelist> category=ComboLock category=20160705 </dynamicpagelist>
  5. Double Hybridization (C Probes+Antibodies)
  6. <dynamicpagelist> category=ComboLock category=20160707 </dynamicpagelist>
  7. Million Fold Test (SOD1)
  8. <dynamicpagelist> category=ComboLock category=20160711 </dynamicpagelist>
  9. C Probes (VIM+SOD1) with Stringent Washes
  10. <dynamicpagelist> category=ComboLock category=20160718 </dynamicpagelist>
  11. Latch 100X and Dextran Test
  12. <dynamicpagelist> category=ComboLock category=20160725 </dynamicpagelist>
  13. Phusion Test
  14. <dynamicpagelist> category=ComboLock category=20160728 </dynamicpagelist>

June 2016[edit]

  1. Stage 2 Test (C Probe, VIM, 6-23-2016)
  2. <dynamicpagelist> category=ComboLock category=20160623 </dynamicpagelist>
  3. Antibody Stage 2 Test 1 (6-27-2016)
  4. <dynamicpagelist> category=ComboLock category=20160627 </dynamicpagelist>
  5. Antibody Stage 2 Test 2 (6-28-2016)
  6. <dynamicpagelist> category=ComboLock category=20160628 </dynamicpagelist>
  7. C Probe SOD1/VIM Test 1 (6-29-2016)
  8. <dynamicpagelist> category=ComboLock category=20160629 </dynamicpagelist>