Daniel:Notebook/GenomeMiner/2013-9-26

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Mock HL155 (Started 9/9/2013)[edit]

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More BWA Align[edit]

Checking a few more bwa alignments that might yield interesting results. In this case I'm checking the 1 per read error data.

Error Counting Results (1 Error per Read, Full Reference Sequence)[edit]

Error Rate: 1.35%
Error Rate of Insertions: 0.221%
Error Rate of Deletions: 0.041%
Error Rate of Substitutions: 1.09%
Alignment %: 99.77%

Error Counting Results (1 Error per Read, Short Reference Sequence)[edit]

Error Rate: 1.30%
Error Rate of Insertions: 0.226
Error Rate of Deletions: 0
Error Rate of Substitutions: 1.07%
Alignment: 96.75%