Daniel:Notebook/Haplotyping/2014-7-16

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Microfluidic Data Processing (Started 7/15/2014)[edit]

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Yesterday's trial run of index 09 from Eric's data seemed to go well, so I'm going to run a few more indexes.

  1. Index 10, HL163
    1. /home/ajgore/AG_Ext12T/GATK_01022012/variantCallerBwaGATK-latest/variantCallerBwaGATK.pl Indx10_coRE_HL163.info > Indx10_coRE_HL163.status &
  2. Index 49, combined samples from HL163 and HL164 for single chamber
    1. /home/ajgore/AG_Ext12T/GATK_01022012/variantCallerBwaGATK-latest/variantCallerBwaGATK.pl Indx49_PGP21.info > Indx49_PGP21.status &