Daniel:Notebook/Haplotyping/2014-7-16
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Microfluidic Data Processing (Started 7/15/2014)[edit]
Yesterday's trial run of index 09 from Eric's data seemed to go well, so I'm going to run a few more indexes.
- Index 10, HL163
- /home/ajgore/AG_Ext12T/GATK_01022012/variantCallerBwaGATK-latest/variantCallerBwaGATK.pl Indx10_coRE_HL163.info > Indx10_coRE_HL163.status &
- Index 49, combined samples from HL163 and HL164 for single chamber
- /home/ajgore/AG_Ext12T/GATK_01022012/variantCallerBwaGATK-latest/variantCallerBwaGATK.pl Indx49_PGP21.info > Indx49_PGP21.status &