Daniel:Notebook/Haplotyping/LFR-BAC-HiC

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Processing LFR and Hi-C Data[edit]

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This page describes the data processing for the LFR-BAC-HiC combined data in the haplotyping project. For data locations, visit the Data Map.

Processing[edit]

  1. The data starts as the uncombined hair files
    1. Merge script for combining
    2. Hi-C Data Processing, BAC Data Processing, and LFR Data Processing
  2. Next, run hapcut in the log likelihood format
    1. HAPCUT run file