Dinh/NOTES/2010-4-22
Paired Chi Square Test for Breast Cancer Samples from Same Individuals[edit]
Sample Code | DM CpGs | CpGs Tested | Rate |
5192 Diet Change | 189 | 78819 | 0.24% |
5215 Diet Change | 251 | 43966 | 0.57% |
9123 Diet Change | 547 | 84610 | 0.65% |
9351 No Diet Change | 567 | 82427 | 0.69% |
11306 No Diet Change | 739 | 86460 | 0.85% |
9491 Diet Change | 2169 | 89534 | 2.42% |
13066 No Diet Change | 830 | 33957 | 2.44% |
7292 No Diet Change | 4671 | 90738 | 5.15% |
1373* No Diet Change | 4490 | 50523 | 8.89% |
5359* Diet Change | 7005 | 75668 | 9.26% |
- Outliers in hierarchical clustering
01373A17.methylFreqv01373B09.methylFreq.chisqResults.txt Total DMRs: 3810 Candidate DMRs: 12333 Rate:0.309 05215A18.methylFreqv05215B09.methylFreq.chisqResults.txt Total DMRs: 183 Candidate DMRs: 10777 Rate:0.017 05359A17.methylFreqv05359B09.methylFreq.chisqResults.txt Total DMRs: 5679 Candidate DMRs: 23044 Rate:0.246 07292A17.methylFreqv07292B09.methylFreq.chisqResults.txt Total DMRs: 3795 Candidate DMRs: 22014 Rate:0.172 09123A17.methylFreqv09123B09.methylFreq.chisqResults.txt Total DMRs: 411 Candidate DMRs: 16051 Rate:0.026 09351A17.methylFreqv09351B09.methylFreq.chisqResults.txt Total DMRs: 430 Candidate DMRs: 15134 Rate:0.028 09491A17.methylFreqv09491B09.methylFreq.chisqResults.txt Total DMRs: 1209 Candidate DMRs: 19802 Rate:0.061 11306A18.methylFreqv11306B09.methylFreq.chisqResults.txt Total DMRs: 550 Candidate DMRs: 15639 Rate:0.035 13066A17.methylFreqv13066B09.methylFreq.chisqResults.txt Total DMRs: 506 Candidate DMRs: 7315 Rate:0.069 05192A18.methylFreqv05192B09.methylFreq.chisqResults.txt Total DMRs: 168 Candidate DMRs: 16196 Rate:0.010
01373A17.methylFreqv01373B09.methylFreq.chisqResults.txt Total DMRs: 4490 Candidate DMRs: 50523 Rate:0.089 05215A18.methylFreqv05215B09.methylFreq.chisqResults.txt Total DMRs: 251 Candidate DMRs: 43966 Rate:0.006 05359A17.methylFreqv05359B09.methylFreq.chisqResults.txt Total DMRs: 7005 Candidate DMRs: 75668 Rate:0.093 07292A17.methylFreqv07292B09.methylFreq.chisqResults.txt Total DMRs: 4671 Candidate DMRs: 90738 Rate:0.051 09123A17.methylFreqv09123B09.methylFreq.chisqResults.txt Total DMRs: 547 Candidate DMRs: 84610 Rate:0.006 09351A17.methylFreqv09351B09.methylFreq.chisqResults.txt Total DMRs: 567 Candidate DMRs: 82427 Rate:0.007 09491A17.methylFreqv09491B09.methylFreq.chisqResults.txt Total DMRs: 2169 Candidate DMRs: 89534 Rate:0.024 11306A18.methylFreqv11306B09.methylFreq.chisqResults.txt Total DMRs: 739 Candidate DMRs: 86460 Rate:0.009 13066A17.methylFreqv13066B09.methylFreq.chisqResults.txt Total DMRs: 830 Candidate DMRs: 33957 Rate:0.024 05192A18.methylFreqv05192B09.methylFreq.chisqResults.txt Total DMRs: 189 Candidate DMRs: 78819 Rate:0.002