EricChu:LabNotesMDA/2016-2-26

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  • generating consensus fastq from pileup to remap with reference to get vcf
nohup /home/kunzhang/softwares/samtools-latest/samtools.pl pileup2fq PGP1_21_ch24.sorted.fragment.quality.pileup > PGP1_21_ch24.fq &