Noi/NOTES/2014-7-2
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Summary of samples and their corresponding index[edit]
HiSeq Rapid run (HiSeq 140627_SN1001)[edit]
- PE 100+7
- NP-RRBS-CTT-5ng, Jun3
- NP-RRBS-CTT-100ng, Jun13
- NP-RRBS-PC-P-1ng-p1-Jun20
- |NP-RRBS-NC-P-1ng-p1-Jun20
Original Library ID | Combined library ID (for sequencing) | Sample ID | TruSeq Index | Rapid run lane# | Input DNA amount (ng) | Note |
NP-RRBS-CTT-5ng, Jun3 | NP_RRBS_CTT_P_20140625 | CTT-frozen 5ng_1 | 9 | 2 | 5 | Sample from Biochain |
NP-RRBS-CTT-5ng, Jun3 | NP_RRBS_CTT_P_20140625 | CTT-frozen 5ng_2 | 10 | 2 | 5 | Sample from Biochain |
NP-RRBS-CTT-5ng, Jun3 | NP_RRBS_CTT_P_20140625 | CTT-FFPE 5ng_1 | 11 | 2 | 5 | Sample from Biochain |
NP-RRBS-CTT-5ng, Jun3 | NP_RRBS_CTT_P_20140625 | CTT-FFPE 5ng_2 | 13 | 2 | 5 | Sample from Biochain |
NP-RRBS-CTT-100ng, Jun13 | NP_RRBS_CTT_P_20140625 | CTT-frozen-100ng_1 | 18 | 2 | 100 | Sample from Biochain |
NP-RRBS-CTT-100ng, Jun13 | NP_RRBS_CTT_P_20140625 | CTT-frozen-100ng_2 | 19 | 2 | 100 | Sample from Biochain |
NP-RRBS-CTT-100ng, Jun13 | NP_RRBS_CTT_P_20140625 | CTT-FFPE-100ng_1 | 20 | 2 | 100 | Sample from Biochain |
NP-RRBS-CTT-100ng, Jun13 | NP_RRBS_CTT_P_20140625 | CTT-FFPE-100ng_2 | 21 | 2 | 100 | Sample from Biochain |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-1_1 | 1 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-1_2 | 2 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-2_1 | 4 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-2_2 | 5 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-4_1 | 6 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-4_2 | 7 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-6_1 | 8 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-6_2 | 12 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-7_1 | 14 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PCT-100ng-Jun16 | NP_RRBS_PCT_20140625 | PC-T-7_2 | 15 | 1 | 100 | Solid tumor tissue from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-1 | 1 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-2 | 2 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-3 | 4 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-4 | 5 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-5 | 6 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-6 | 7 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-7 | 8 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | PC-P-10 | 12 | 2 | 1 | Plasma from UCSD-004 project |
NP-RRBS-NC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | NC-P-2 | 14 | 2 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | NC-P-3 | 15 | 2 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | NC-P-5 | 16 | 2 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p1-Jun20 | NP_RRBS_CTT_P_20140625 | NC-P-6 | 27 | 2 | 1 | Normal control plasma from Kang Zhang's lab |
MiSeq run (MiSeq140630)[edit]
Original Library ID | Sample ID | TruSeq Index | Input DNA amount (ng) | Note |
NP-RRBS-PC-P-1ng-p2-Jun20 | PC-P-8 | 10 | 1 | Plasma from UCSD-004 project |
NP-RRBS-PC-P-1ng-p2-Jun20 | PC-P-9 | 11 | 1 | Plasma from UCSD-004 project |
NP-RRBS-NC-P-1ng-p2-Jun20 | NC-P-1 | 13 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p2-Jun20 | NC-P-7 | 18 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p2-Jun20 | NC-P-8 | 19 | 1 | Normal control plasma from Kang Zhang's lab |
NP-RRBS-NC-P-1ng-p2-Jun20 | NC-P-9 | 20 | 1 | Normal control plasma from Kang Zhang's lab |
- UCSD-004 project: Pancreatic cancer samples
- CTT: Colon tumor tissue from Biochain
- PC = Pancreatic cancer
- T: Tissue
- P: Plasma