Noi/NOTES/2014-8-24
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Summary of RRBS & WGBS libraries generated from plasma DNA[edit]
No | Generated by | Samples | # of libraries | Fragmentedby | End-repaired | Sequenced |
1 | RRBS | Normal plasma DNA from Kang Zhang's lab | 10 | MspI | dA:dC:dG | YES |
2 | RRBS | Plasma DNA from pancreatic cancer patients | 10 | MspI | dA:dC:dG | YES |
3 | RRBS | Plasma DNA fromcolon cancer patients | 10 | MspI | dA:dC:dG | YES |
4 | RRBS | Plasma DNA from lung cancer patients | 10 | MspI | dA:dC:dG | YES |
5 | RRBS | Normal plasma DNA from Kang Zhang's lab | 18 | MspI/TaqI | dA:dC:dG | No |
6 | WGBS | Plasma DNA from pancreatic cancer patients | 8 | No | dA:dC:dG | No |
7 | WGBS | Plasma DNA fromcolon cancer patients | 8 | No | dA:dC:dG | No |
8 | WGBS | Plasma DNA from lung cancer patients | 8 | No | dA:dC:dG | No |
9 | WGBS | Normal plasma DNA from KangZhang's lab | 24 | No | dA:dT:dG:dC | No |
10 | WGBS | Plasma DNA from pancreatic cancer patients | 8 | No | dA:dT:dG:dC | No |
11 | WGBS | Plasma DNA fromcolon cancer patients | 8 | No | dA:dT:dG:dC | No |
12 | WGBS | Plasma DNA from lung cancer patients | 8 | No | dA:dT:dG:dC | No |
Note:
- - Samples in 1 and 5 do not overlap