Result: mapping statistic for fastq by bismark to DennisLo's data

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Sample N(reads) N(mapped) P(mapping) N(C) N(MCPG) N(MCHG) N(MCHH) N(UCPG) N(UCHG) N(UCHH) P(MCPG) P(MCHG) P(MCHH)
BMT1 120279650 102240567 85.0% 2927178696 101335820 777219 2409712 28271158 632233116 2162151671 78.2% 0.1% 0.1%
BMT2 98055408 82495914 84.1% 2374590615 81046498 642930 1964208 28146435 521795001 1740995543 74.2% 0.1% 0.1%
BMT3 84584773 69999898 82.8% 2035611406 72789251 583487 1749771 24172320 450735467 1485581110 75.1% 0.1% 0.1%
CTR101 225967341 169026477 74.8% 2500243704 125154242 1265798 3130798 38612328 665550423 1666530115 76.4% 0.2% 0.2%
CTR103 237303619 179254626 75.5% 2609257888 140949703 1815955 4368217 47325099 721135313 1693663601 74.9% 0.3% 0.3%
CTR104 170177267 135759647 79.8% 1982746813 93410413 1442393 3928524 28867970 512675190 1342422323 76.4% 0.3% 0.3%
CTR106 215486171 163723637 76.0% 1963562558 92284204 995945 2633064 30334862 513321974 1323992509 75.3% 0.2% 0.2%
CTR107 164250828 127471796 77.6% 1864585289 94678430 768297 1909336 30943151 499715812 1236570263 75.4% 0.2% 0.2%
CTR108 153077381 122648462 80.1% 1775767653 86219927 792132 2105924 26414357 464969144 1195266169 76.5% 0.2% 0.2%
CTR110 152331755 114705807 75.3% 1680736502 83060916 828179 2124069 26319024 444070037 1124334277 75.9% 0.2% 0.2%
CTR111 203295834 161516886 79.4% 2329226936 111878692 1176738 3128744 32205534 604741994 1576095234 77.6% 0.2% 0.2%
CTR113 141781556 114092793 80.5% 1654427366 80065855 754238 1953931 23843854 432423881 1115385607 77.1% 0.2% 0.2%
CTR114 142539161 117107902 82.2% 1678985473 80528207 478870 1226966 23051839 439923991 1133775600 77.7% 0.1% 0.1%
CTR117 153174024 122522124 80.0% 1773329351 85184949 700736 1809515 26161003 465059596 1194413552 76.5% 0.2% 0.2%
CTR118 72216443 54917991 76.0% 757195634 40502370 227024 539974 12798323 211102166 492025777 76.0% 0.1% 0.1%
CTR126 103012136 76189866 74.0% 1030858117 51148661 448274 1150214 14765506 272989153 690356309 77.6% 0.2% 0.2%
CTR127 73315772 56706275 77.3% 790387883 37161107 217665 551543 10978421 203274167 538204980 77.2% 0.1% 0.1%
CTR128 98620304 72195774 73.2% 1036468663 48111288 288789 747539 14508256 263263118 709549673 76.8% 0.1% 0.1%
CTR129 168900676 138316667 81.9% 1971728996 90783176 675028 1805531 25397888 502770177 1350297196 78.1% 0.1% 0.1%
CTR131 75799181 58848432 77.6% 840721452 38651003 224501 585555 10739926 214032929 576487538 78.3% 0.1% 0.1%
CTR132 110495272 81969799 74.2% 1198513934 57561789 429784 1119900 18278848 308494027 812629586 75.9% 0.1% 0.1%
CTR134 102442236 72862044 71.1% 1046916701 48041561 388713 1059103 14323193 264542860 718561271 77.0% 0.1% 0.1%
CTR147 199985577 160186376 80.1% 2230827006 109136906 1145153 2956552 33853461 594275474 1489459460 76.3% 0.2% 0.2%
CTR148 205427215 166627082 81.1% 2306820535 108286592 846827 2184393 32460983 602783758 1560257982 76.9% 0.1% 0.1%
CTR149 208140333 168435912 80.9% 2375317302 116296238 866742 2185839 34909392 632651011 1588408080 76.9% 0.1% 0.1%
CTR150 191433238 155317403 81.1% 2158796518 104970728 588013 1443065 32890652 577713854 1441190206 76.1% 0.1% 0.1%
CTR151 142786510 110046225 77.1% 1544640928 77128450 549072 1379734 24891257 416731473 1023960942 75.6% 0.1% 0.1%
CTR152 181555330 144913733 79.8% 2011715992 99724042 671167 1690946 32943713 545873315 1330812809 75.2% 0.1% 0.1%
CTR153 188228798 150010730 79.7% 2099783567 100350196 652958 1665415 33022571 558397483 1405694944 75.2% 0.1% 0.1%
CTR154 140074377 112403960 80.2% 1572277722 78210657 474183 1157888 24870961 423514413 1044049620 75.9% 0.1% 0.1%
CTR84 192912549 142696824 74.0% 2877072039 150648281 882454 2154329 44795929 767020784 1911570262 77.1% 0.1% 0.1%
CTR85 192672685 158139071 82.1% 3090329302 159157949 887656 2135666 48616971 826304252 2053226808 76.6% 0.1% 0.1%
CTR86 165090019 130947247 79.3% 2619427603 143641782 831888 1956734 45508679 717405434 1710083086 75.9% 0.1% 0.1%
CTR97 185714295 149700570 80.6% 2934686434 151353803 983878 2425643 46606710 783038698 1950277702 76.5% 0.1% 0.1%
CTR98 173413375 144311106 83.2% 2846475403 148838061 1418019 3439169 50097253 769729805 1872953096 74.8% 0.2% 0.2%
HOT151 171047449 138894580 81.2% 1967095733 92658532 1585564 4291558 29504465 510832517 1328223097 75.8% 0.3% 0.3%
HOT156 157399875 126272613 80.2% 1827022807 85604992 4125263 12733910 29010108 471855170 1223693364 74.7% 0.9% 1.0%
HOT159 197594137 156308807 79.1% 2267753595 107224124 2508052 7307275 38949064 589601085 1522163995 73.4% 0.4% 0.5%
HOT162 160501979 131284737 81.8% 1854311245 86162549 996899 2869727 27403282 489430239 1247448549 75.9% 0.2% 0.2%
HOT164 194768115 157108030 80.7% 2262055179 104761796 1895355 5464624 40594551 591559199 1517779654 72.1% 0.3% 0.4%
HOT167 176093877 141281981 80.2% 2061277049 94351760 1896281 5608552 38016329 534775775 1386628352 71.3% 0.4% 0.4%
HOT170 170292478 136486080 80.1% 1869805697 86763984 972693 2646592 28715993 496812048 1253894387 75.1% 0.2% 0.2%
HOT172 216862686 168934888 77.9% 2305016720 102081690 738523 1992662 32132665 594846042 1573225138 76.1% 0.1% 0.1%
HOT192 179812278 144095597 80.1% 2032242225 88827387 530163 1454744 28840484 520365777 1392223670 75.5% 0.1% 0.1%
HOT197 181023160 145323891 80.3% 1875225596 91861324 597448 1507658 30618480 504527035 1246113651 75.0% 0.1% 0.1%
HOT198 160854996 115799952 72.0% 1603816801 65546437 363095 868785 41607734 437562769 1057867981 61.2% 0.1% 0.1%
HOT204 159741744 128312922 80.3% 1805770898 82011874 523874 1374590 25036804 463278176 1233545580 76.6% 0.1% 0.1%
HOT205 162784395 128897793 79.2% 1804290135 82069000 608259 1604323 28523225 468952269 1222533059 74.2% 0.1% 0.1%
HOT207 166305341 129429937 77.8% 1818949744 83029210 650368 1709192 28872477 473176349 1231512148 74.2% 0.1% 0.1%
HOT208 127628546 99802920 78.2% 1416432344 62263701 529446 1396211 21937993 364658459 965646534 73.9% 0.1% 0.1%
HOT215 128848093 103404241 80.3% 1458987311 65898515 625190 1690368 22814872 380545071 987413295 74.3% 0.2% 0.2%
HOT222 181261151 146608424 80.9% 2103041515 92062044 626107 1677406 34711436 537421496 1436543026 72.6% 0.1% 0.1%
HOT224 187889097 154578122 82.3% 2186801994 98881212 638443 1696151 29896015 562301835 1493388338 76.8% 0.1% 0.1%
HOT227 145924877 110804962 75.9% 1535762886 62793263 645085 1842221 21012671 391906801 1057562845 74.9% 0.2% 0.2%
HOT229 146512955 119449429 81.5% 1718011850 80181437 472765 1211292 24326553 445184247 1166635556 76.7% 0.1% 0.1%
HOT233 176658574 139523458 79.0% 2033355333 103377934 719120 1729727 32363047 548403757 1346761748 76.2% 0.1% 0.1%
HOT236 190730957 143925204 75.5% 2014854942 90285672 808440 2128902 30906304 519493378 1371232246 74.5% 0.2% 0.2%
HOT238 138045151 110945654 80.4% 1561195225 69943757 649395 1816310 21707230 402125398 1064953135 76.3% 0.2% 0.2%
HOT240 188147404 147071325 78.2% 2131192415 97828955 825639 2200862 31814170 548334150 1450188639 75.5% 0.2% 0.2%
HOT243 196453082 150715119 76.7% 2136544371 106083683 846378 2102801 35309732 576055671 1416146106 75.0% 0.1% 0.1%
HOT265 203546246 158882001 78.1% 1835304862 67747394 555984 1363668 45293651 489198840 1231145325 59.9% 0.1% 0.1%
HOT273 192173362 146550096 76.3% 2034567418 85147845 707628 1836466 39464105 536145992 1371265382 68.3% 0.1% 0.1%
LTP1 85075030 65630804 77.1% 1885513114 67823818 716998 2098799 22004130 423270992 1369598377 75.5% 0.2% 0.2%
LTP2 100033885 75897867 75.9% 2182916430 74881293 884548 2662166 26279075 481231913 1596977435 74.0% 0.2% 0.2%
LTP3 77600203 59995883 77.3% 1729836833 60879726 689883 2106024 20180416 382971392 1263009392 75.1% 0.2% 0.2%
LTP4 71166115 55088680 77.4% 1572564876 53257377 508553 1484541 21927717 354929582 1140457106 70.8% 0.1% 0.1%
Lymphoma.run1 65795123 50984374 77.5% 1397071782 32266720 348513 955888 26192176 358387433 978921052 55.2% 0.1% 0.1%
Lymphoma.run2 61897109 47622382 76.9% 1303311274 29855129 349371 1037091 24456976 334226736 913385971 55.0% 0.1% 0.1%
Lymphoma.run3 63097119 49419482 78.3% 1359697321 37300044 401118 1097399 25310196 346831699 948756865 59.6% 0.1% 0.1%
Lymphoma.run4 61468655 47894029 77.9% 1315722347 34615910 420230 1287055 24545748 336188605 918664799 58.5% 0.1% 0.1%
Pregnancy.1 184794030 152751104 82.7% 4182955985 130626502 779205 2513190 54522875 911953430 3082560783 70.6% 0.1% 0.1%
Pregnancy.10 140401618 114415691 81.5% 3117247989 92663578 764475 2565538 47603005 691357431 2282293962 66.1% 0.1% 0.1%
Pregnancy.11 184794030 152751104 82.7% 4182955985 130626502 779205 2513190 54522875 911953430 3082560783 70.6% 0.1% 0.1%
Pregnancy.12 152036008 128576849 84.6% 3556419578 112538310 703969 2212188 47099474 786783378 2607082259 70.5% 0.1% 0.1%
Pregnancy.13 138195190 112832474 81.6% 3078556056 98559760 694728 2198744 41007556 687280353 2248814915 70.6% 0.1% 0.1%
Pregnancy.14 140401618 114415691 81.5% 3117247989 92663578 764475 2565538 47603005 691357431 2282293962 66.1% 0.1% 0.1%
Pregnancy.15 178459361 147771651 82.8% 4052603361 130304414 842890 2687039 50337562 895913447 2972518009 72.1% 0.1% 0.1%
Pregnancy.2 152036008 128576849 84.6% 3556419578 112538310 703969 2212188 47099474 786783378 2607082259 70.5% 0.1% 0.1%
Pregnancy.3 178459361 147771651 82.8% 4052603361 130304414 842890 2687039 50337562 895913447 2972518009 72.1% 0.1% 0.1%
Pregnancy.4 138195190 112832474 81.6% 3078556056 98559760 694728 2198744 41007556 687280353 2248814915 70.6% 0.1% 0.1%
Pregnancy.5 128232428 104007003 81.1% 2836843509 90068190 628445 1993125 37513682 625473819 2081166248 70.6% 0.1% 0.1%
Pregnancy.6 134861675 110527970 82.0% 3049485412 101790286 805565 2568763 39412667 681812003 2223096128 72.1% 0.1% 0.1%
Pregnancy.7 140337306 114609455 81.7% 3114436364 96247717 628926 2008156 41922332 686221007 2287408226 69.7% 0.1% 0.1%
Pregnancy.8.run1 75322857 63134140 83.8% 1723085313 51611616 350521 1194328 22029509 371550929 1276348410 70.1% 0.1% 0.1%
Pregnancy.8.run2 74901652 62804843 83.8% 1714133982 51333611 350936 1195467 21906058 369647652 1269700258 70.1% 0.1% 0.1%
Pregnancy.9.run1 56113334 46352150 82.6% 1270011278 38587713 290269 964151 18106114 281074893 930988138 68.1% 0.1% 0.1%
Pregnancy.9.run2 55730717 46038885 82.6% 1261594768 38324439 291223 965596 17981841 279221505 924810164 68.1% 0.1% 0.1%
T21.1 214986590 125532277 58.4% 3763064075 179345777 1128024 2717744 87830840 1014070106 2477971584 67.1% 0.1% 0.1%
T21.2 206293148 105295523 51.0% 3193236276 156792649 975020 2426745 74761069 863720146 2094560647 67.7% 0.1% 0.1%
T21.3 211730840 122170300 57.7% 3680911914 176844457 1242156 3090579 86556005 1002399536 2410779181 67.1% 0.1% 0.1%
T21.4 192070290 100218500 52.2% 2952004982 138508667 1063814 2680810 62113425 795747258 1951891008 69.0% 0.1% 0.1%
T21.5 173683877 105158355 60.5% 2095568826 121365571 783641 1789403 62899151 620934346 1287796714 65.9% 0.1% 0.1%
TBR34prePlsm 183587010 150308075 81.9% 1987530062 103809978 786919 1669634 37240593 574537147 1269485791 73.6% 0.1% 0.1%
TBR36prePlsm 200560015 162220069 80.9% 2294914780 93596045 656163 1437701 58133573 633969225 1507122073 61.7% 0.1% 0.1%