# Files Requirement:
FASTQnames/trainingCCT.fq.names.gz
FASTQnames/trainingLCT.fq.names.gz
FASTQnames/trainingNCP.fq.names.gz
BAMfiles/merged.CCT.bam
BAMfiles/merged.LCT.bam
BAMfiles/merged.50NCP.bam


# The simulations are fixed for 10M total reads 
# To make 20x5 simulations of cancer foreground: 100K, 500K, 1000K, and 2000K reads
# Run example:

./scripts/makeSimulations.sh 20

