Supplementary web site for
Digital DNA methylation analysis of stem cell
reprogramming by targeted bisulfite sequencing
Jie Deng, Robert Shoemaker, Bin Xie, Athurva Gore, Emily Leproust,
Jessica Antosiewica-Bourget, Dieter Egli, Nimet Maherali, In-Hyun Park, Junying Yu, George Daley, Kevin Eggan, Konrad Hochedlinger,
James Thomson, Wei Wang, Yuan Gao, Kun Zhang.
Methylation data in BED format.
Note: These files can be visualized using
the Human Genome Brower Gateway (http://genome.ucsc.edu/cgi-bin/hgGateway) by
loading all the files as custom tracks.
Alternatively, each of the files can be loaded to the Genome Browser using the
following web links:
1. BJ
2.
IMR90
3.
IMR90_2
4.
hFib2
5.
BJ-iPS11
6.
BJ-iPS12
7.
IMR90-iPS
8.
hFib2-iPS
10. Hues12
11. Hues42
12. Hues63
To quickly navigate to the 26
selected genes or the 8 ENCODE regions, the chromosome coordinates in Supplementary Table 2 can be copied/pasted to the “position/search”
window of the UCSC Genome Browser.
Raw Illumina GA sequencing reads.
Perl scripts
Please contact Dr. Kun Zhang (kzhang _at_ bioeng.ucsd.edu) for questions.