Mapping statistic for fastq by bismark to DennisLo's data

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Sample N(reads) N(mapped) P(mapping) N(C) N(MCPG) N(MCHG) N(MCHH) N(UCPG) N(UCHG) N(UCHH) P(MCPG) P(MCHG) P(MCHH)
BMT1 120279650 102257283 85.0% 2928794746 101366216 780893 2950483 28277984 632413006 2163006164 78.2% 0.1% 0.1%
BMT2 979741 825259 84.2% 23769811 816503 6538 25299 280949 5227839 17412683 74.4% 0.1% 0.1%
BMT3 456717 377749 82.7% 10983279 391911 3030 11441 129318 2431747 8015832 75.2% 0.1% 0.1%
CTR101 225967341 169026477 74.8% 2500243704 125154242 1265798 3130798 38612328 665550423 1666530115 76.4% 0.2% 0.2%
CTR103 237303619 179254626 75.5% 2609257888 140949703 1815955 4368217 47325099 721135313 1693663601 74.9% 0.3% 0.3%
CTR104 170177267 135759647 79.8% 1982746813 93410413 1442393 3928524 28867970 512675190 1342422323 76.4% 0.3% 0.3%
CTR106 215486171 163723637 76.0% 1963562558 92284204 995945 2633064 30334862 513321974 1323992509 75.3% 0.2% 0.2%
CTR107 164250828 127471796 77.6% 1864585289 94678430 768297 1909336 30943151 499715812 1236570263 75.4% 0.2% 0.2%
CTR108 153077381 122648462 80.1% 1775767653 86219927 792132 2105924 26414357 464969144 1195266169 76.5% 0.2% 0.2%
CTR110 152331755 114705807 75.3% 1680736502 83060916 828179 2124069 26319024 444070037 1124334277 75.9% 0.2% 0.2%
CTR111 203295834 161516886 79.4% 2329226936 111878692 1176738 3128744 32205534 604741994 1576095234 77.6% 0.2% 0.2%
CTR113 141781556 114092793 80.5% 1654427366 80065855 754238 1953931 23843854 432423881 1115385607 77.1% 0.2% 0.2%
CTR114 142539161 117107902 82.2% 1678985473 80528207 478870 1226966 23051839 439923991 1133775600 77.7% 0.1% 0.1%
CTR117 153174024 122522124 80.0% 1773329351 85184949 700736 1809515 26161003 465059596 1194413552 76.5% 0.2% 0.2%
CTR118 72216443 54917991 76.0% 757195634 40502370 227024 539974 12798323 211102166 492025777 76.0% 0.1% 0.1%
CTR126 103012136 76189866 74.0% 1030858117 51148661 448274 1150214 14765506 272989153 690356309 77.6% 0.2% 0.2%
CTR127 73315772 56706275 77.3% 790387883 37161107 217665 551543 10978421 203274167 538204980 77.2% 0.1% 0.1%
CTR128 98620304 72195774 73.2% 1036468663 48111288 288789 747539 14508256 263263118 709549673 76.8% 0.1% 0.1%
CTR129 168900676 138316667 81.9% 1971728996 90783176 675028 1805531 25397888 502770177 1350297196 78.1% 0.1% 0.1%
CTR131 75799181 58848432 77.6% 840721452 38651003 224501 585555 10739926 214032929 576487538 78.3% 0.1% 0.1%
CTR132 110495272 81969799 74.2% 1198513934 57561789 429784 1119900 18278848 308494027 812629586 75.9% 0.1% 0.1%
CTR134 102442236 72862044 71.1% 1046916701 48041561 388713 1059103 14323193 264542860 718561271 77.0% 0.1% 0.1%
CTR147 199985577 160186376 80.1% 2230827006 109136906 1145153 2956552 33853461 594275474 1489459460 76.3% 0.2% 0.2%
CTR148 205427215 166627082 81.1% 2306820535 108286592 846827 2184393 32460983 602783758 1560257982 76.9% 0.1% 0.1%
CTR149 208140333 168435912 80.9% 2375317302 116296238 866742 2185839 34909392 632651011 1588408080 76.9% 0.1% 0.1%
CTR150 191433238 155317403 81.1% 2158796518 104970728 588013 1443065 32890652 577713854 1441190206 76.1% 0.1% 0.1%
CTR151 142786510 110046225 77.1% 1544640928 77128450 549072 1379734 24891257 416731473 1023960942 75.6% 0.1% 0.1%
CTR152 181555330 144913733 79.8% 2011715992 99724042 671167 1690946 32943713 545873315 1330812809 75.2% 0.1% 0.1%
CTR153 188228798 150010730 79.7% 2099783567 100350196 652958 1665415 33022571 558397483 1405694944 75.2% 0.1% 0.1%
CTR154 140074377 112403960 80.2% 1572277722 78210657 474183 1157888 24870961 423514413 1044049620 75.9% 0.1% 0.1%
CTR84 192912549 142696824 74.0% 2877072039 150648281 882454 2154329 44795929 767020784 1911570262 77.1% 0.1% 0.1%
CTR85 192672685 158139071 82.1% 3090329302 159157949 887656 2135666 48616971 826304252 2053226808 76.6% 0.1% 0.1%
CTR86 165090019 130947247 79.3% 2619427603 143641782 831888 1956734 45508679 717405434 1710083086 75.9% 0.1% 0.1%
CTR97 185714295 149700570 80.6% 2934686434 151353803 983878 2425643 46606710 783038698 1950277702 76.5% 0.1% 0.1%
CTR98 173413375 144311106 83.2% 2846475403 148838061 1418019 3439169 50097253 769729805 1872953096 74.8% 0.2% 0.2%
HOT151 171047449 138894580 81.2% 1967095733 92658532 1585564 4291558 29504465 510832517 1328223097 75.8% 0.3% 0.3%
HOT156 157399875 126272613 80.2% 1827022807 85604992 4125263 12733910 29010108 471855170 1223693364 74.7% 0.9% 1.0%
HOT159 197594137 156308807 79.1% 2267753595 107224124 2508052 7307275 38949064 589601085 1522163995 73.4% 0.4% 0.5%
HOT162 160501979 131284737 81.8% 1854311245 86162549 996899 2869727 27403282 489430239 1247448549 75.9% 0.2% 0.2%
HOT164 194768115 157108030 80.7% 2262055179 104761796 1895355 5464624 40594551 591559199 1517779654 72.1% 0.3% 0.4%
HOT167 176093877 141281981 80.2% 2061277049 94351760 1896281 5608552 38016329 534775775 1386628352 71.3% 0.4% 0.4%
HOT170 170292478 136486080 80.1% 1869805697 86763984 972693 2646592 28715993 496812048 1253894387 75.1% 0.2% 0.2%
HOT172 216862686 168934888 77.9% 2305016720 102081690 738523 1992662 32132665 594846042 1573225138 76.1% 0.1% 0.1%
HOT192 179812278 144095597 80.1% 2032242225 88827387 530163 1454744 28840484 520365777 1392223670 75.5% 0.1% 0.1%
HOT197 181023160 145323891 80.3% 1875225596 91861324 597448 1507658 30618480 504527035 1246113651 75.0% 0.1% 0.1%
HOT198 160854996 115799952 72.0% 1603816801 65546437 363095 868785 41607734 437562769 1057867981 61.2% 0.1% 0.1%
HOT204 159741744 128312922 80.3% 1805770898 82011874 523874 1374590 25036804 463278176 1233545580 76.6% 0.1% 0.1%
HOT205 162784395 128897793 79.2% 1804290135 82069000 608259 1604323 28523225 468952269 1222533059 74.2% 0.1% 0.1%
HOT207 166305341 129429937 77.8% 1818949744 83029210 650368 1709192 28872477 473176349 1231512148 74.2% 0.1% 0.1%
HOT208 127628546 99802920 78.2% 1416432344 62263701 529446 1396211 21937993 364658459 965646534 73.9% 0.1% 0.1%
HOT215 128848093 103404241 80.3% 1458987311 65898515 625190 1690368 22814872 380545071 987413295 74.3% 0.2% 0.2%
HOT222 181261151 146608424 80.9% 2103041515 92062044 626107 1677406 34711436 537421496 1436543026 72.6% 0.1% 0.1%
HOT224 187889097 154578122 82.3% 2186801994 98881212 638443 1696151 29896015 562301835 1493388338 76.8% 0.1% 0.1%
HOT227 145924877 110804962 75.9% 1535762886 62793263 645085 1842221 21012671 391906801 1057562845 74.9% 0.2% 0.2%
HOT229 146512955 119449429 81.5% 1718011850 80181437 472765 1211292 24326553 445184247 1166635556 76.7% 0.1% 0.1%
HOT233 176658574 139523458 79.0% 2033355333 103377934 719120 1729727 32363047 548403757 1346761748 76.2% 0.1% 0.1%
HOT236 190730957 143925204 75.5% 2014854942 90285672 808440 2128902 30906304 519493378 1371232246 74.5% 0.2% 0.2%
HOT238 138045151 110945654 80.4% 1561195225 69943757 649395 1816310 21707230 402125398 1064953135 76.3% 0.2% 0.2%
HOT240 188147404 147071325 78.2% 2131192415 97828955 825639 2200862 31814170 548334150 1450188639 75.5% 0.2% 0.2%
HOT243 196453082 150715119 76.7% 2136544371 106083683 846378 2102801 35309732 576055671 1416146106 75.0% 0.1% 0.1%
HOT265 203546246 158882001 78.1% 1835304862 67747394 555984 1363668 45293651 489198840 1231145325 59.9% 0.1% 0.1%
HOT273 192173362 146550096 76.3% 2034567418 85147845 707628 1836466 39464105 536145992 1371265382 68.3% 0.1% 0.1%
LTP1 63806272 49227972 77.2% 1414991431 50885762 540854 1974621 16504020 317512615 1027573559 75.5% 0.2% 0.2%
LTP2 75025413 56939586 75.9% 1638316243 56187769 666355 2379420 19714474 361041047 1198327178 74.0% 0.2% 0.2%
LTP3 2077561 1636233 78.8% 47344138 1680162 18781 67496 558953 10533809 34484937 75.0% 0.2% 0.2%
LTP4 938139 744663 79.4% 21321222 723798 6482 26498 295990 4824975 15443479 71.0% 0.1% 0.2%
Lymphoma.run1 65795123 50974161 77.5% 1397865600 32266536 351189 1422145 26189397 358376048 979260285 55.2% 0.1% 0.1%
Lymphoma.run2 30948554 16230335 52.4% 445425351 10214303 122639 675504 8478624 113935487 311998794 54.6% 0.1% 0.2%
Lymphoma.run3 10516186 4327938 41.2% 119384245 3308449 38658 285485 2294444 30323503 83133706 59.0% 0.1% 0.3%
Lymphoma.run4 46101491 35915323 77.9% 987327631 25966285 317238 1274122 18403432 252149012 689217542 58.5% 0.1% 0.2%
Pregnancy.1 184794030 152737633 82.7% 4186966990 130668289 789761 4205272 54525765 912216687 3084561216 70.6% 0.1% 0.1%
Pregnancy.10 140401618 114376236 81.5% 3120800846 92685198 774153 4235442 47598984 691504809 2284002260 66.1% 0.1% 0.2%
Pregnancy.11 92397015 52111420 56.4% 1431412332 44840505 299762 2848498 19049606 311243376 1053130585 70.2% 0.1% 0.3%
Pregnancy.12 114027006 96422113 84.6% 2669541472 84426836 534275 2616178 35329047 590245169 1956389967 70.5% 0.1% 0.1%
Pregnancy.13 103646392 84598557 81.6% 2311718916 73937157 528122 2924073 30758924 515605369 1687965271 70.6% 0.1% 0.2%
Pregnancy.14 140401618 114376236 81.5% 3120800846 92685198 774153 4235442 47598984 691504809 2284002260 66.1% 0.1% 0.2%
Pregnancy.15 178459361 147740129 82.8% 4055594356 130319059 852621 4220305 50331335 896008393 2973862643 72.1% 0.1% 0.1%
Pregnancy.2 126696673 11322580 8.9% 316456630 10035312 137926 4707294 4299042 68649241 228627815 70.0% 0.2% 2.0%
Pregnancy.3 178459361 147740129 82.8% 4055594356 130319059 852621 4220305 50331335 896008393 2973862643 72.1% 0.1% 0.1%
Pregnancy.4 138195190 112796665 81.6% 3082174726 98583648 705369 3903777 41003846 687429568 2250548518 70.6% 0.1% 0.2%
Pregnancy.5 128232428 103998010 81.1% 2839734242 90096476 636580 3257171 37515334 625653627 2082575054 70.6% 0.1% 0.2%
Pregnancy.6 134861675 110492393 81.9% 3052962509 101812202 815460 4255337 39409750 681949571 2224720189 72.1% 0.1% 0.2%
Pregnancy.7 105252979 85932388 81.6% 2338616870 72208496 479275 2808372 31445070 514818482 1716857175 69.7% 0.1% 0.2%
Pregnancy.8.run1 56492143 47351367 83.8% 1293416329 38721777 265795 1347247 16519839 278742659 957819012 70.1% 0.1% 0.1%
Pregnancy.8.run2 56176239 47101374 83.8% 1286608560 38508615 265396 1355415 16424138 277297761 952757235 70.1% 0.1% 0.1%
Pregnancy.9.run1 56113334 46346716 82.6% 1271307417 38598741 293950 1554891 18106256 281145819 931607760 68.1% 0.1% 0.2%
Pregnancy.9.run2 37153811 27042324 72.8% 742421226 22547973 177463 1121534 10629152 164092748 543852356 68.0% 0.1% 0.2%
T21.1 214986590 125532230 58.4% 3765450538 179344301 1184078 4225654 87833200 1014040569 2478822736 67.1% 0.1% 0.2%
T21.2 137528765 53680863 39.0% 1630623707 80093185 615387 3052760 38529198 439819470 1068513707 67.5% 0.1% 0.3%
T21.3 211730840 122189549 57.7% 3683765940 176842318 1451543 4826116 86592943 1002359958 2411693062 67.1% 0.1% 0.2%
T21.4 192070290 100221202 52.2% 2954126680 138507109 1106704 3991757 62114472 795721208 1952685430 69.0% 0.1% 0.2%
T21.5 130262908 78852444 60.5% 1576300143 91017106 634486 4963520 47135814 465598914 966950303 65.9% 0.1% 0.5%
TBR34prePlsm 183587010 150308075 81.9% 1987530062 103809978 786919 1669634 37240593 574537147 1269485791 73.6% 0.1% 0.1%
TBR36prePlsm 200560015 162220069 80.9% 2294914780 93596045 656163 1437701 58133573 633969225 1507122073 61.7% 0.1% 0.1%