Mapping statistic for fastq by bismark to DennisLo's data
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Sample | N(reads) | N(mapped) | P(mapping) | N(C) | N(MCPG) | N(MCHG) | N(MCHH) | N(UCPG) | N(UCHG) | N(UCHH) | P(MCPG) | P(MCHG) | P(MCHH) |
BMT1 | 120279650 | 102257283 | 85.0% | 2928794746 | 101366216 | 780893 | 2950483 | 28277984 | 632413006 | 2163006164 | 78.2% | 0.1% | 0.1% |
BMT2 | 979741 | 825259 | 84.2% | 23769811 | 816503 | 6538 | 25299 | 280949 | 5227839 | 17412683 | 74.4% | 0.1% | 0.1% |
BMT3 | 456717 | 377749 | 82.7% | 10983279 | 391911 | 3030 | 11441 | 129318 | 2431747 | 8015832 | 75.2% | 0.1% | 0.1% |
CTR101 | 225967341 | 169026477 | 74.8% | 2500243704 | 125154242 | 1265798 | 3130798 | 38612328 | 665550423 | 1666530115 | 76.4% | 0.2% | 0.2% |
CTR103 | 237303619 | 179254626 | 75.5% | 2609257888 | 140949703 | 1815955 | 4368217 | 47325099 | 721135313 | 1693663601 | 74.9% | 0.3% | 0.3% |
CTR104 | 170177267 | 135759647 | 79.8% | 1982746813 | 93410413 | 1442393 | 3928524 | 28867970 | 512675190 | 1342422323 | 76.4% | 0.3% | 0.3% |
CTR106 | 215486171 | 163723637 | 76.0% | 1963562558 | 92284204 | 995945 | 2633064 | 30334862 | 513321974 | 1323992509 | 75.3% | 0.2% | 0.2% |
CTR107 | 164250828 | 127471796 | 77.6% | 1864585289 | 94678430 | 768297 | 1909336 | 30943151 | 499715812 | 1236570263 | 75.4% | 0.2% | 0.2% |
CTR108 | 153077381 | 122648462 | 80.1% | 1775767653 | 86219927 | 792132 | 2105924 | 26414357 | 464969144 | 1195266169 | 76.5% | 0.2% | 0.2% |
CTR110 | 152331755 | 114705807 | 75.3% | 1680736502 | 83060916 | 828179 | 2124069 | 26319024 | 444070037 | 1124334277 | 75.9% | 0.2% | 0.2% |
CTR111 | 203295834 | 161516886 | 79.4% | 2329226936 | 111878692 | 1176738 | 3128744 | 32205534 | 604741994 | 1576095234 | 77.6% | 0.2% | 0.2% |
CTR113 | 141781556 | 114092793 | 80.5% | 1654427366 | 80065855 | 754238 | 1953931 | 23843854 | 432423881 | 1115385607 | 77.1% | 0.2% | 0.2% |
CTR114 | 142539161 | 117107902 | 82.2% | 1678985473 | 80528207 | 478870 | 1226966 | 23051839 | 439923991 | 1133775600 | 77.7% | 0.1% | 0.1% |
CTR117 | 153174024 | 122522124 | 80.0% | 1773329351 | 85184949 | 700736 | 1809515 | 26161003 | 465059596 | 1194413552 | 76.5% | 0.2% | 0.2% |
CTR118 | 72216443 | 54917991 | 76.0% | 757195634 | 40502370 | 227024 | 539974 | 12798323 | 211102166 | 492025777 | 76.0% | 0.1% | 0.1% |
CTR126 | 103012136 | 76189866 | 74.0% | 1030858117 | 51148661 | 448274 | 1150214 | 14765506 | 272989153 | 690356309 | 77.6% | 0.2% | 0.2% |
CTR127 | 73315772 | 56706275 | 77.3% | 790387883 | 37161107 | 217665 | 551543 | 10978421 | 203274167 | 538204980 | 77.2% | 0.1% | 0.1% |
CTR128 | 98620304 | 72195774 | 73.2% | 1036468663 | 48111288 | 288789 | 747539 | 14508256 | 263263118 | 709549673 | 76.8% | 0.1% | 0.1% |
CTR129 | 168900676 | 138316667 | 81.9% | 1971728996 | 90783176 | 675028 | 1805531 | 25397888 | 502770177 | 1350297196 | 78.1% | 0.1% | 0.1% |
CTR131 | 75799181 | 58848432 | 77.6% | 840721452 | 38651003 | 224501 | 585555 | 10739926 | 214032929 | 576487538 | 78.3% | 0.1% | 0.1% |
CTR132 | 110495272 | 81969799 | 74.2% | 1198513934 | 57561789 | 429784 | 1119900 | 18278848 | 308494027 | 812629586 | 75.9% | 0.1% | 0.1% |
CTR134 | 102442236 | 72862044 | 71.1% | 1046916701 | 48041561 | 388713 | 1059103 | 14323193 | 264542860 | 718561271 | 77.0% | 0.1% | 0.1% |
CTR147 | 199985577 | 160186376 | 80.1% | 2230827006 | 109136906 | 1145153 | 2956552 | 33853461 | 594275474 | 1489459460 | 76.3% | 0.2% | 0.2% |
CTR148 | 205427215 | 166627082 | 81.1% | 2306820535 | 108286592 | 846827 | 2184393 | 32460983 | 602783758 | 1560257982 | 76.9% | 0.1% | 0.1% |
CTR149 | 208140333 | 168435912 | 80.9% | 2375317302 | 116296238 | 866742 | 2185839 | 34909392 | 632651011 | 1588408080 | 76.9% | 0.1% | 0.1% |
CTR150 | 191433238 | 155317403 | 81.1% | 2158796518 | 104970728 | 588013 | 1443065 | 32890652 | 577713854 | 1441190206 | 76.1% | 0.1% | 0.1% |
CTR151 | 142786510 | 110046225 | 77.1% | 1544640928 | 77128450 | 549072 | 1379734 | 24891257 | 416731473 | 1023960942 | 75.6% | 0.1% | 0.1% |
CTR152 | 181555330 | 144913733 | 79.8% | 2011715992 | 99724042 | 671167 | 1690946 | 32943713 | 545873315 | 1330812809 | 75.2% | 0.1% | 0.1% |
CTR153 | 188228798 | 150010730 | 79.7% | 2099783567 | 100350196 | 652958 | 1665415 | 33022571 | 558397483 | 1405694944 | 75.2% | 0.1% | 0.1% |
CTR154 | 140074377 | 112403960 | 80.2% | 1572277722 | 78210657 | 474183 | 1157888 | 24870961 | 423514413 | 1044049620 | 75.9% | 0.1% | 0.1% |
CTR84 | 192912549 | 142696824 | 74.0% | 2877072039 | 150648281 | 882454 | 2154329 | 44795929 | 767020784 | 1911570262 | 77.1% | 0.1% | 0.1% |
CTR85 | 192672685 | 158139071 | 82.1% | 3090329302 | 159157949 | 887656 | 2135666 | 48616971 | 826304252 | 2053226808 | 76.6% | 0.1% | 0.1% |
CTR86 | 165090019 | 130947247 | 79.3% | 2619427603 | 143641782 | 831888 | 1956734 | 45508679 | 717405434 | 1710083086 | 75.9% | 0.1% | 0.1% |
CTR97 | 185714295 | 149700570 | 80.6% | 2934686434 | 151353803 | 983878 | 2425643 | 46606710 | 783038698 | 1950277702 | 76.5% | 0.1% | 0.1% |
CTR98 | 173413375 | 144311106 | 83.2% | 2846475403 | 148838061 | 1418019 | 3439169 | 50097253 | 769729805 | 1872953096 | 74.8% | 0.2% | 0.2% |
HOT151 | 171047449 | 138894580 | 81.2% | 1967095733 | 92658532 | 1585564 | 4291558 | 29504465 | 510832517 | 1328223097 | 75.8% | 0.3% | 0.3% |
HOT156 | 157399875 | 126272613 | 80.2% | 1827022807 | 85604992 | 4125263 | 12733910 | 29010108 | 471855170 | 1223693364 | 74.7% | 0.9% | 1.0% |
HOT159 | 197594137 | 156308807 | 79.1% | 2267753595 | 107224124 | 2508052 | 7307275 | 38949064 | 589601085 | 1522163995 | 73.4% | 0.4% | 0.5% |
HOT162 | 160501979 | 131284737 | 81.8% | 1854311245 | 86162549 | 996899 | 2869727 | 27403282 | 489430239 | 1247448549 | 75.9% | 0.2% | 0.2% |
HOT164 | 194768115 | 157108030 | 80.7% | 2262055179 | 104761796 | 1895355 | 5464624 | 40594551 | 591559199 | 1517779654 | 72.1% | 0.3% | 0.4% |
HOT167 | 176093877 | 141281981 | 80.2% | 2061277049 | 94351760 | 1896281 | 5608552 | 38016329 | 534775775 | 1386628352 | 71.3% | 0.4% | 0.4% |
HOT170 | 170292478 | 136486080 | 80.1% | 1869805697 | 86763984 | 972693 | 2646592 | 28715993 | 496812048 | 1253894387 | 75.1% | 0.2% | 0.2% |
HOT172 | 216862686 | 168934888 | 77.9% | 2305016720 | 102081690 | 738523 | 1992662 | 32132665 | 594846042 | 1573225138 | 76.1% | 0.1% | 0.1% |
HOT192 | 179812278 | 144095597 | 80.1% | 2032242225 | 88827387 | 530163 | 1454744 | 28840484 | 520365777 | 1392223670 | 75.5% | 0.1% | 0.1% |
HOT197 | 181023160 | 145323891 | 80.3% | 1875225596 | 91861324 | 597448 | 1507658 | 30618480 | 504527035 | 1246113651 | 75.0% | 0.1% | 0.1% |
HOT198 | 160854996 | 115799952 | 72.0% | 1603816801 | 65546437 | 363095 | 868785 | 41607734 | 437562769 | 1057867981 | 61.2% | 0.1% | 0.1% |
HOT204 | 159741744 | 128312922 | 80.3% | 1805770898 | 82011874 | 523874 | 1374590 | 25036804 | 463278176 | 1233545580 | 76.6% | 0.1% | 0.1% |
HOT205 | 162784395 | 128897793 | 79.2% | 1804290135 | 82069000 | 608259 | 1604323 | 28523225 | 468952269 | 1222533059 | 74.2% | 0.1% | 0.1% |
HOT207 | 166305341 | 129429937 | 77.8% | 1818949744 | 83029210 | 650368 | 1709192 | 28872477 | 473176349 | 1231512148 | 74.2% | 0.1% | 0.1% |
HOT208 | 127628546 | 99802920 | 78.2% | 1416432344 | 62263701 | 529446 | 1396211 | 21937993 | 364658459 | 965646534 | 73.9% | 0.1% | 0.1% |
HOT215 | 128848093 | 103404241 | 80.3% | 1458987311 | 65898515 | 625190 | 1690368 | 22814872 | 380545071 | 987413295 | 74.3% | 0.2% | 0.2% |
HOT222 | 181261151 | 146608424 | 80.9% | 2103041515 | 92062044 | 626107 | 1677406 | 34711436 | 537421496 | 1436543026 | 72.6% | 0.1% | 0.1% |
HOT224 | 187889097 | 154578122 | 82.3% | 2186801994 | 98881212 | 638443 | 1696151 | 29896015 | 562301835 | 1493388338 | 76.8% | 0.1% | 0.1% |
HOT227 | 145924877 | 110804962 | 75.9% | 1535762886 | 62793263 | 645085 | 1842221 | 21012671 | 391906801 | 1057562845 | 74.9% | 0.2% | 0.2% |
HOT229 | 146512955 | 119449429 | 81.5% | 1718011850 | 80181437 | 472765 | 1211292 | 24326553 | 445184247 | 1166635556 | 76.7% | 0.1% | 0.1% |
HOT233 | 176658574 | 139523458 | 79.0% | 2033355333 | 103377934 | 719120 | 1729727 | 32363047 | 548403757 | 1346761748 | 76.2% | 0.1% | 0.1% |
HOT236 | 190730957 | 143925204 | 75.5% | 2014854942 | 90285672 | 808440 | 2128902 | 30906304 | 519493378 | 1371232246 | 74.5% | 0.2% | 0.2% |
HOT238 | 138045151 | 110945654 | 80.4% | 1561195225 | 69943757 | 649395 | 1816310 | 21707230 | 402125398 | 1064953135 | 76.3% | 0.2% | 0.2% |
HOT240 | 188147404 | 147071325 | 78.2% | 2131192415 | 97828955 | 825639 | 2200862 | 31814170 | 548334150 | 1450188639 | 75.5% | 0.2% | 0.2% |
HOT243 | 196453082 | 150715119 | 76.7% | 2136544371 | 106083683 | 846378 | 2102801 | 35309732 | 576055671 | 1416146106 | 75.0% | 0.1% | 0.1% |
HOT265 | 203546246 | 158882001 | 78.1% | 1835304862 | 67747394 | 555984 | 1363668 | 45293651 | 489198840 | 1231145325 | 59.9% | 0.1% | 0.1% |
HOT273 | 192173362 | 146550096 | 76.3% | 2034567418 | 85147845 | 707628 | 1836466 | 39464105 | 536145992 | 1371265382 | 68.3% | 0.1% | 0.1% |
LTP1 | 63806272 | 49227972 | 77.2% | 1414991431 | 50885762 | 540854 | 1974621 | 16504020 | 317512615 | 1027573559 | 75.5% | 0.2% | 0.2% |
LTP2 | 75025413 | 56939586 | 75.9% | 1638316243 | 56187769 | 666355 | 2379420 | 19714474 | 361041047 | 1198327178 | 74.0% | 0.2% | 0.2% |
LTP3 | 2077561 | 1636233 | 78.8% | 47344138 | 1680162 | 18781 | 67496 | 558953 | 10533809 | 34484937 | 75.0% | 0.2% | 0.2% |
LTP4 | 938139 | 744663 | 79.4% | 21321222 | 723798 | 6482 | 26498 | 295990 | 4824975 | 15443479 | 71.0% | 0.1% | 0.2% |
Lymphoma.run1 | 65795123 | 50974161 | 77.5% | 1397865600 | 32266536 | 351189 | 1422145 | 26189397 | 358376048 | 979260285 | 55.2% | 0.1% | 0.1% |
Lymphoma.run2 | 30948554 | 16230335 | 52.4% | 445425351 | 10214303 | 122639 | 675504 | 8478624 | 113935487 | 311998794 | 54.6% | 0.1% | 0.2% |
Lymphoma.run3 | 10516186 | 4327938 | 41.2% | 119384245 | 3308449 | 38658 | 285485 | 2294444 | 30323503 | 83133706 | 59.0% | 0.1% | 0.3% |
Lymphoma.run4 | 46101491 | 35915323 | 77.9% | 987327631 | 25966285 | 317238 | 1274122 | 18403432 | 252149012 | 689217542 | 58.5% | 0.1% | 0.2% |
Pregnancy.1 | 184794030 | 152737633 | 82.7% | 4186966990 | 130668289 | 789761 | 4205272 | 54525765 | 912216687 | 3084561216 | 70.6% | 0.1% | 0.1% |
Pregnancy.10 | 140401618 | 114376236 | 81.5% | 3120800846 | 92685198 | 774153 | 4235442 | 47598984 | 691504809 | 2284002260 | 66.1% | 0.1% | 0.2% |
Pregnancy.11 | 92397015 | 52111420 | 56.4% | 1431412332 | 44840505 | 299762 | 2848498 | 19049606 | 311243376 | 1053130585 | 70.2% | 0.1% | 0.3% |
Pregnancy.12 | 114027006 | 96422113 | 84.6% | 2669541472 | 84426836 | 534275 | 2616178 | 35329047 | 590245169 | 1956389967 | 70.5% | 0.1% | 0.1% |
Pregnancy.13 | 103646392 | 84598557 | 81.6% | 2311718916 | 73937157 | 528122 | 2924073 | 30758924 | 515605369 | 1687965271 | 70.6% | 0.1% | 0.2% |
Pregnancy.14 | 140401618 | 114376236 | 81.5% | 3120800846 | 92685198 | 774153 | 4235442 | 47598984 | 691504809 | 2284002260 | 66.1% | 0.1% | 0.2% |
Pregnancy.15 | 178459361 | 147740129 | 82.8% | 4055594356 | 130319059 | 852621 | 4220305 | 50331335 | 896008393 | 2973862643 | 72.1% | 0.1% | 0.1% |
Pregnancy.2 | 126696673 | 11322580 | 8.9% | 316456630 | 10035312 | 137926 | 4707294 | 4299042 | 68649241 | 228627815 | 70.0% | 0.2% | 2.0% |
Pregnancy.3 | 178459361 | 147740129 | 82.8% | 4055594356 | 130319059 | 852621 | 4220305 | 50331335 | 896008393 | 2973862643 | 72.1% | 0.1% | 0.1% |
Pregnancy.4 | 138195190 | 112796665 | 81.6% | 3082174726 | 98583648 | 705369 | 3903777 | 41003846 | 687429568 | 2250548518 | 70.6% | 0.1% | 0.2% |
Pregnancy.5 | 128232428 | 103998010 | 81.1% | 2839734242 | 90096476 | 636580 | 3257171 | 37515334 | 625653627 | 2082575054 | 70.6% | 0.1% | 0.2% |
Pregnancy.6 | 134861675 | 110492393 | 81.9% | 3052962509 | 101812202 | 815460 | 4255337 | 39409750 | 681949571 | 2224720189 | 72.1% | 0.1% | 0.2% |
Pregnancy.7 | 105252979 | 85932388 | 81.6% | 2338616870 | 72208496 | 479275 | 2808372 | 31445070 | 514818482 | 1716857175 | 69.7% | 0.1% | 0.2% |
Pregnancy.8.run1 | 56492143 | 47351367 | 83.8% | 1293416329 | 38721777 | 265795 | 1347247 | 16519839 | 278742659 | 957819012 | 70.1% | 0.1% | 0.1% |
Pregnancy.8.run2 | 56176239 | 47101374 | 83.8% | 1286608560 | 38508615 | 265396 | 1355415 | 16424138 | 277297761 | 952757235 | 70.1% | 0.1% | 0.1% |
Pregnancy.9.run1 | 56113334 | 46346716 | 82.6% | 1271307417 | 38598741 | 293950 | 1554891 | 18106256 | 281145819 | 931607760 | 68.1% | 0.1% | 0.2% |
Pregnancy.9.run2 | 37153811 | 27042324 | 72.8% | 742421226 | 22547973 | 177463 | 1121534 | 10629152 | 164092748 | 543852356 | 68.0% | 0.1% | 0.2% |
T21.1 | 214986590 | 125532230 | 58.4% | 3765450538 | 179344301 | 1184078 | 4225654 | 87833200 | 1014040569 | 2478822736 | 67.1% | 0.1% | 0.2% |
T21.2 | 137528765 | 53680863 | 39.0% | 1630623707 | 80093185 | 615387 | 3052760 | 38529198 | 439819470 | 1068513707 | 67.5% | 0.1% | 0.3% |
T21.3 | 211730840 | 122189549 | 57.7% | 3683765940 | 176842318 | 1451543 | 4826116 | 86592943 | 1002359958 | 2411693062 | 67.1% | 0.1% | 0.2% |
T21.4 | 192070290 | 100221202 | 52.2% | 2954126680 | 138507109 | 1106704 | 3991757 | 62114472 | 795721208 | 1952685430 | 69.0% | 0.1% | 0.2% |
T21.5 | 130262908 | 78852444 | 60.5% | 1576300143 | 91017106 | 634486 | 4963520 | 47135814 | 465598914 | 966950303 | 65.9% | 0.1% | 0.5% |
TBR34prePlsm | 183587010 | 150308075 | 81.9% | 1987530062 | 103809978 | 786919 | 1669634 | 37240593 | 574537147 | 1269485791 | 73.6% | 0.1% | 0.1% |
TBR36prePlsm | 200560015 | 162220069 | 80.9% | 2294914780 | 93596045 | 656163 | 1437701 | 58133573 | 633969225 | 1507122073 | 61.7% | 0.1% | 0.1% |