SRX381621 tumor breast.chr20.job
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#!/bin/csh #PBS -N SRX381621_tumor_breast.chr19.hapInfo.txt #PBS -q glean #PBS -l nodes=1:ppn=1 #PBS -l walltime=8:00:00 #PBS -o SRX381621_tumor_breast.chr19.log #PBS -e SRX381621_tumor_breast.chr19.err #PBS -V #PBS -M shihcheng.guo@gmail.com #PBS -m abe #PBS -A k4zhang-group cd /oasis/tscc/scratch/shg047/Estellar2016/bam /home/shg047/bin/mergedBam2hapInfo.pl /home/k4zhang/my_oasis_tscc/MONOD/All_WGBS_pooled/WGBS_pooled_mappable_bins.all_autosomes.mld_blocks_r2-0.5.bed /oasis/tscc/scratch/ddiep/BAMfiles/SRX381621_tumor_breast.chr19.sorted.clipped.bam nonbismark > ../hapinfo/SRX381621_tumor_breast.chr19.hapInfo.txt