The R code

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library("GEOquery")
GSE54115 <- getGEO("GSE54115",destdir="/home/sguo/monod/data/geo")
save(GSE54115, file="GSE54115_matrix.Rdata")
GSE56851 <- getGEO("GSE56851",destdir="/home/sguo/monod/data/geo")
save(GSE56851, file="GSE56851_matrix.Rdata")
GSE54769 <- getGEO("GSE54769",destdir="/home/sguo/monod/data/geo")
save(GSE54769, file="GSE54769_matrix.Rdata")