Jie:LabNotes/allele specific methylation: Difference between revisions
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==3rd round cell type and individual dependent ASM validation== | ==3rd round cell type and individual dependent ASM validation== | ||
refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-26] | |||
refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-27] |
Revision as of 20:18, 27 August 2009
1st round ASM validation
ASM validation of DNMT3B, LSP1, MATN4, MMP9
- ASM validation of these four genes on 8 cell lines: refer to LabNotes [1]
- ASE validation of MMP9 on PGP1L and PGP1F: refer to LabNotes [2]
ASE validation of fuzzyl methylated genes
- ASE validation of fuzzyl methylated genes: refer to LabNotes [3]
- ASM validation of GLIPR1L2_BJ:
- genotype and ASE validation of GLIPR1L2 on BJ and BJ-iPS12: refer to LabNotes [4]
ASM from same donor and from different donors
refer to LabNotes on [5]
2nd round ASM validation
refer to LabNotes on [6]