Jie:LabNotes/allele specific methylation: Difference between revisions
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refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-26] | refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-26] | ||
refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-27] | refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-27] | ||
==4th round known imprinted gene ASM validation== | |||
refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-9-2] |
Latest revision as of 16:21, 8 September 2009
1st round ASM validation[edit]
ASM validation of DNMT3B, LSP1, MATN4, MMP9[edit]
- ASM validation of these four genes on 8 cell lines: refer to LabNotes [1]
- ASE validation of MMP9 on PGP1L and PGP1F: refer to LabNotes [2]
ASE validation of fuzzyl methylated genes[edit]
- ASE validation of fuzzyl methylated genes: refer to LabNotes [3]
- ASM validation of GLIPR1L2_BJ:
- genotype and ASE validation of GLIPR1L2 on BJ and BJ-iPS12: refer to LabNotes [4]
ASM from same donor and from different donors[edit]
refer to LabNotes on [5]
2nd round ASM validation[edit]
ASM validation of r2 and SNP overlapped regions: refer to LabNotes on [6]
3rd round cell type and individual dependent ASM validation[edit]
refer to LabNotes on [7] refer to LabNotes on [8]
4th round known imprinted gene ASM validation[edit]
refer to LabNotes on [9]