Jie:LabNotes/allele specific methylation: Difference between revisions

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refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-26]
refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-26]
refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-27]
refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-8-27]
==4th round known imprinted gene ASM validation==
refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-9-2]

Latest revision as of 16:21, 8 September 2009

1st round ASM validation[edit]

ASM validation of DNMT3B, LSP1, MATN4, MMP9[edit]

  1. ASM validation of these four genes on 8 cell lines: refer to LabNotes [1]
  2. ASE validation of MMP9 on PGP1L and PGP1F: refer to LabNotes [2]

ASE validation of fuzzyl methylated genes[edit]

  1. ASE validation of fuzzyl methylated genes: refer to LabNotes [3]
  2. ASM validation of GLIPR1L2_BJ:
  3. genotype and ASE validation of GLIPR1L2 on BJ and BJ-iPS12: refer to LabNotes [4]

ASM from same donor and from different donors[edit]

refer to LabNotes on [5]

2nd round ASM validation[edit]

ASM validation of r2 and SNP overlapped regions: refer to LabNotes on [6]

3rd round cell type and individual dependent ASM validation[edit]

refer to LabNotes on [7] refer to LabNotes on [8]

4th round known imprinted gene ASM validation[edit]

refer to LabNotes on [9]